KEGG   Apteryx mantelli mantelli (North Island brown kiwi): 106484209
Entry
106484209         CDS       T04298                                 
Symbol
SNRNP40
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 40
  KO
K12857  Prp8 binding protein
Organism
aam  Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106484209 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:aam03041]
    106484209 (SNRNP40)
Spliceosome [BR:aam03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106484209 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    106484209 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_EML ANAPC4_WD40 Beta-prop_SCAP Beta-prop_SPT8 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR75_2nd Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_WDR19_1st Cytochrom_D1 WDR54 WD40_like Beta-prop_HPS5 Beta-prop_Nup120_160 PROPPIN
Other DBs
NCBI-GeneID: 106484209
NCBI-ProteinID: XP_013797813
UniProt: A0A8B7IJI6
LinkDB
Position
Un
AA seq 329 aa
MFTSFIYLFLCFFSLVLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAV
WDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQ
VLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAM
DNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAGGSADRFVYVWDTT
SRRILYKLPGHAGSVNELAFHPEEPISKSYPAQVSWGNSFGAGVTAPSSRQQPKICLWPR
ALGIRRRFVGKGICCSTAHWDWALGPWAE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgtttacgtcattcatttatttattcctctgtttcttttctctagtgctgtggaatgtc
tatggggactgtgataattatgccaccctgaagggacacagtggagcagttatggagttg
cactataacacagatggcagcatgctcttctcggcatccacagataaaacagtggctgtg
tgggatagtgagacgggagagagagtgaagaggctgaagggccatacgtcattcgttaac
tcctgttacccagcaaggcgaggacctcagcttgtctgtacgggcagcgatgatgggacg
gtgaagctgtgggatatcaggaaaaaagctgctgtccaaacctttcagaacacttaccag
gtcttggctgtgactttcaatgacaccagtgatcagatcatatcggggggcattgacaat
gacattaaggtgtgggaccttcgccagaacaagctcacttacaccatgagaggacacgcg
gactccgtgacaggcctcagtctgagttcggaaggctcttacctgctctctaatgcaatg
gacaacacagttcgtatctgggatgtgcgtccgtttgcccctaaagagagatgtgtgaag
atattccaggggaatgtgcataattttgaaaagaatctcctgagatgttcttggtcccca
gatgggagtaaaatagcagggggatcagcagacaggtttgtctacgtgtgggacaccaca
tccaggaggatcttgtacaagctgccaggccacgccggctccgtcaatgaactggctttc
cacccggaggaacccattagtaagtcctacccagctcaagtcagctggggaaatagtttc
ggggctggcgtgactgctccttcctccagacagcagcccaaaatctgcctgtggcccaga
gccctgggtatcagaaggagatttgtggggaagggaatctgttgctccactgcgcactgg
gattgggccctgggcccctgggctgagtga

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