Apteryx mantelli mantelli (North Island brown kiwi): 106488831
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Entry
106488831 CDS
T04298
Symbol
RTCB
Name
(RefSeq) RNA 2',3'-cyclic phosphate and 5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aam03016
]
106488831 (RTCB)
Enzymes [BR:
aam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
106488831 (RTCB)
Transfer RNA biogenesis [BR:
aam03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
106488831 (RTCB)
Prokaryotic type
tRNA splicing ligases
106488831 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
106488831
NCBI-ProteinID:
XP_013803347
LinkDB
All DBs
Position
Un
AA seq
440 aa
AA seq
DB search
MKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVR
LLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYA
WAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARK
MGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQD
YLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDG
KERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGT
TCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTC
HAAGISKKAIKLRPIAVIKG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagattgggaatgtggctgcattacctggcattgttcacagatcaataggcctt
ccagatgtccattcaggctatgggtttgccattggcaacatggctgccttcgatatgaat
gatcctgaagcagtagtgtcaccaggtggtgtcgggtttgacatcaactgtggtgtccgc
ttactacgtacaaacttggacgaaagtgatgtacagcctgtgaaggagcagctcgctcag
gctatgtttgaccacattcctgttggtgtgggctccaagggtgtcatccccatgaatgcc
aaggatttggaagaggctctagaaatgggtgtggactggtctctccgggaaggctatgcc
tgggcagaggacaaggagcactgcgaggaatatggaaggatgctgcaggctgatcccaac
aaggtttcctcaagagcaaagaagaggggcctccctcagctggggaccttgggagcagga
aaccattatgccgagatccaggttgtggatgacatttacaacgaatatgctgccaggaaa
atgggcattgaccacaaggggcaggtgtgcgtaatgatccacagtggcagcagaggtttg
ggccaccaagttgccacagatgcattggtggctatggaaaaagctatgaaacgggacaaa
atcatagtgaatgatcgccagctggcgtgtgccagaattgcctctgcagaaggacaggat
tacctgaagggaatggcagctgctggaaactatgcatgggtcaaccgctcttctatgact
ttcttaacaagacaggcctttgccaaagtcttcaacacaaccccagatgaccttgatatg
catgttatctatgatgtatctcacaacattgccaaagtggagcaacatgtagtggatgga
aaagagcgaactctgctggtgcacaggaagggatcaaccagggccttccctcctcaccat
ccccttatcgctgttgattatcaactgactggacagcctgttctgattggcgggactatg
ggcacctgtagctacgttcttactggcacagagcaaggcatgactgagaccttcggaact
acttgtcatggagctggtcgtgctctgtctcgagccaaatctcgacgtaacttggacttc
caggatgtattggacaaactggctgacatgggcattgccatccgtgttgcttctcccaaa
ctggttatggaagaagcaccagagtcttataagaatgtgacagatgtggttaacacctgc
catgcagctggcatcagcaagaaagccattaaattgagacctattgctgttattaaaggc
tag
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