Apteryx mantelli mantelli (North Island brown kiwi): 106490821
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Entry
106490821 CDS
T04298
Symbol
PCF11
Name
(RefSeq) PCF11 cleavage and polyadenylation factor subunit
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106490821 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aam03021
]
106490821 (PCF11)
03019 Messenger RNA biogenesis [BR:
aam03019
]
106490821 (PCF11)
Transcription machinery [BR:
aam03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106490821 (PCF11)
Messenger RNA biogenesis [BR:
aam03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106490821 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
106490821
NCBI-ProteinID:
XP_013805791
LinkDB
All DBs
Position
Un
AA seq
1707 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKQHVSQTPHMAVKPPHQTSVQSEKNKPSPSPPLHDIKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNATNQSDTKASKTAQAEKQNSSKQEKLKASEKTLKKELDQSE
AKSKSPSPLKNKLPSTKDTKTQECESTKVSEISKRDPRLKKHLQEKPEGKEDEVKEKKKN
TEKKEKEEHKTCEHRPVGSRNKVINGVVQKQDTATEESEKQGGKQGRSSNRKRSRSRSPK
SRSPSTHSPKRRDRRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEECAQTARDERNSN
KRNLKQEVRDPRRVKKAQEDRPQETASQHSAKASPDPKENAENWQGSKSGKRWKSGWEEN
KNSQQNEEHQALGKSPHQRHRENWAASKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANERLASGEITQDEFLVVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFGERSRRHSPVSGSNRPFPDNLSPLESRRRLEEQNAAKGARSSKNFDPYDSWGESD
EFREALRQQGKSTPEFQKIDGDAICRFDNREERQLLGKAGVREEPRSPFSFKRARYEDPD
KAPFSESPGSRFGGIEVKQRISALMEDRPLFDGSPRQPAARVAVDGPGSPFVDGPAAGSN
SRIDGPPGQAAMRFEGPLVGGGASQFDGPLAGAGGAGALRFDGPPGQLAGALRFEGPPGQ
VGGGGPLRFEGPLGQIGGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPRGQISGGLRFEGP
HGQPLGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGP
HGQPVGPHGPSGGGLRFEGPHGPSGGGLRLEGPGVGPRLIDGPAHQGGGGLRFEGPLGRT
GPRFDGCHSAGFDGQPGQLPLLQRFDGIHGQPGPRFERAPGQQTQPRFETAIPQRFDGPH
QQPSRFDLPLGLQGARFENVANHPASRLELPPYGQSGPFGEHPSQGYNGPSHGMQFQRPE
IFDGSPGPNFNGPAGPGAQNFPLRASGHYFDEKSLQGPQYGNFNSMSVGNNQVSLMSAQP
GPYGQGQQYLPNPGSFVQNPAGALPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTS
AQVNETSAQPAAEEEDDDQDQSEDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGM
RFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQF
FEKAHEEVVLKTQEAAKEKEFQSVPAGPAGADESCEICQEQFEQYWDEEEEEWHLKNAIR
VDEKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPD
DTPTTCAEESTPASTDIKTEPDKVESV
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggtagcagcgaggcccgggaggacgcgtgccgcgat
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcttggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctcccagttatgtaccttatggattccattgtc
aagaatgtgggaagagaatatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctcaactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgatcaggcaacaattgcttgcaaagcaaaaacagttgttagaacttcagcagaaaaaa
ttagagctggagctggaacagactaaagcacagttggctgtttctcttagtgttcaacaa
ggatcatctactatagcttcagttccagcaccttccaagcaacatgtgtctcaaacacct
catatggcagttaaacctcctcatcagacgtctgtgcaatctgaaaaaaacaaaccatcc
ccaagtcctccacttcatgatatcaaaatagtaaacagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcagtctcataggaaagaatttccaccaaacgca
accaatcaatctgatactaaggcaagcaaaacagctcaggctgaaaaacagaactcatca
aagcaagaaaaattgaaagcaagtgaaaaaacactgaagaaagaacttgatcagtcagaa
gcaaaatctaaatcaccatcacctttgaaaaataagctacccagtactaaagatactaaa
acccaggaatgtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagattgaaa
aaacatcttcaagaaaagccagaaggcaaagaggatgaggtgaaagagaagaagaaaaat
acagagaaaaaagaaaaagaggaacataagacatgtgaacatagacctgtaggcagcaga
aataaagtaattaatggtgttgttcagaaacaagatacggctacagaggagtcagaaaaa
cagggtggaaaacaggggagatcaagtaatagaaaacgctcacgatcacgctctcctaaa
tcacggtcaccatctacgcattctccaaaaagaagagatagaagatcacccaaacgaaga
cttaggagtttatctcccacttcatcaactcctaaaattggaaagatacgtcagataggt
cctaagcagtctcatgttgaagaatgtgcacaaacagcaagagatgaaagaaattctaat
aaacgaaaccttaaacaagaggtgcgagatccaaggagagtgaaaaaagctcaagaagat
aggccccaagagacagcaagccagcattctgcaaaagcctctcctgatccaaaggagaat
gcagaaaactggcaaggatccaaatcaggcaagaggtggaaatctggttgggaagaaaat
aaaaactcacaacagaatgaagaacaccaagcacttggtaaatcccctcaccaaagacac
cgggaaaattgggctgctagtaaaggaattttgtcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagcaagaga
gaattacttaaaaaggcaaatgaacgcttagcatctggtgagataacacaagatgagttc
cttgttgtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgc
aatgtgtgggatagccctacagaagaaaaatgtggtttgaaaaagaaacctcttctgtct
gatgcagaattaacatattatgaacacaaagcgaaattgaagagaacccaagtacagcat
tcattgtcgagacttgatctgttagatcccgatgatattttagattatcatatacctgat
gcattgctttctggaatagaatgtgagcaagccaaagctaagcgtggagtacagtttgac
agaaaagaaccatttggagaaagatcccggcgacattctcctgtaagtggcagtaataga
ccttttcctgataatctttcgccacttgagagtcgacgaagacttgaggaacaaaatgct
gctaaaggagcaagaagttctaaaaattttgatccttacgacagctggggagaatcagat
gagtttagagaagctctcagacaacaggggaagagcacaccggagttccagaaaatagat
ggtgatgcaatctgcagatttgataatcgtgaagaaagacagcttcttgggaaagctggt
gttcgagaggaaccaaggtccccattcagtttcaagagagcgaggtatgaagatccagac
aaagcaccgttttcagagagtccaggatcaagatttggaggcattgaagtaaagcagaga
ataagtgcactgatggaagacaggcctctctttgatggctcacctagacaacctgctgca
agggttgcggtagatggaccaggaagtccttttgttgatggtcctgctgctggttcaaat
tctagaattgatgggccacctggacaggctgctatgagatttgaggggcctctggtaggg
ggaggtgcctctcaatttgatggaccactggcaggagcagggggagctggagccctaaga
tttgatgggccaccagggcagctggcaggtgccctcaggtttgaaggacccccgggacag
gttggtggaggaggtcccttgaggtttgagggacccctcgggcagataggtggtcctttg
cgttttgaggggccagcaggacagcctgtaggtggtcctagatttgaaggacctggagtt
ggtctgaggtttgaggggccccgtggtcaaatttcaggtggtctcaggtttgagggaccc
catggtcaacctctggggcctcgaggtcaaccagggggtggtctcaggtttgagggaccc
catggtcagcccttggggcctcatggtcaaccagggggtggtctcaggtttgaggggcca
cacttacaaccattggggccccatggtcaacctggaggtggcctcagatttgaggggcca
catggtcagcctgtgggaccacatggaccatcaggtggtggacttagatttgaggggcca
catggaccatcaggtggtgggctcagattggaaggaccaggggtaggtcctaggttaatt
gatgggccagcacatcaaggagggggtggtcttagatttgaaggtcctctgggtcgaact
ggtccaagatttgatggctgtcattcagctggctttgatggtcaacctggacagctacct
cttctgcaaagatttgatggaattcatggacaacctggcccaagatttgaaagagcacct
ggccaacagacacaaccacgatttgaaacagccatacctcaaagatttgatggtcctcac
cagcaaccctcaaggtttgacttgccgcttggccttcaaggtgcacgttttgaaaatgta
gctaaccatcctgcctctagactagaattgccaccgtatggacaaagtggtccgtttggt
gaacatcccagccagggctacaatggaccatctcatgggatgcagttccagagacctgaa
atatttgatggttctccaggaccaaatttcaatgggccagctggcccaggagcacagaat
ttcccattgagagcatctggacattattttgatgaaaaaagtcttcagggtcctcaatat
ggaaacttcaatagtatgtcagtgggaaataatcaggtgtctctcatgtctgctcaacca
ggaccttatggccaaggtcaacagtatttaccaaatcctggaagctttgtacagaaccca
gcaggagcccttccacattcataccctgataaccaccttggccagcttgatgtcaatgaa
ttgtttgctaaactgttgtcaacaggaatcctcaaactgtcaaaaactgattccacgtca
gcacaagtgaatgaaacgtcagcccagccagctgctgaagaggaggatgatgatcaagac
cagagtgaagatcaagatgtcccagacctcactaactttacagttgaagaactcagacag
cgttatgatagtgttataaatcgactgtacactggaattcagtgttactcatgtggaatg
agatttactacttcacagacagatgtttatgcagatcacttagattggcattatcgccaa
aaccgcacagaaaaggatgttagcagaaaagttacacacagaaggtggtactacagttta
acagactggattgaatttgaagaaatagctgatctagaggaacgtgcaaaaagccagttt
tttgaaaaagctcatgaagaggtggtgttgaagacacaagaagctgcaaaagagaaagag
tttcagagtgtccctgctggaccagctggagcagatgagagctgtgaaatttgccaagag
caatttgaacagtattgggatgaggaagaggaagagtggcatctgaagaatgctattaga
gtagatgaaaagatttaccatccctcatgttacgaagattaccaaaatacatcctcattt
gattgcacaccatctcccagcaagactcctgtagaaaatccactaaatattatgttgaac
attgttaaacaagaaacacaagaatcctgcgactctcctaaagtcaaagaagaacctgat
gacacccctactacctgtgcagaagagagcacacctgcatctacagatattaaaacagaa
cctgataaggttgaatctgtttaa
DBGET
integrated database retrieval system
