Apteryx mantelli mantelli (North Island brown kiwi): 106492309
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Entry
106492309 CDS
T04298
Symbol
SMG5
Name
(RefSeq) SMG5, nonsense mediated mRNA decay factor
KO
K11125
protein SMG5
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106492309 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aam03019
]
106492309 (SMG5)
03032 DNA replication proteins [BR:
aam03032
]
106492309 (SMG5)
Messenger RNA biogenesis [BR:
aam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106492309 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
106492309 (SMG5)
DNA replication proteins [BR:
aam03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
106492309 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Piezo_TM1-24
Motif
Other DBs
NCBI-GeneID:
106492309
NCBI-ProteinID:
XP_013807559
LinkDB
All DBs
Position
Un
AA seq
936 aa
AA seq
DB search
MFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLIAGIGFYQHLL
LYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDLARYQN
ELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQSEVSFE
GAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRCKDIKRLLVSFMYLQSLLQPKSSSLD
SELTSLCQSVLEDFNLCLFYLPSPPNLNSTSEDEEEYESGYSFLPDLLIFRMVIICLMSV
HSLKRADDQEPREPLNSIEKEAEADLANHQPSEEQQKNDCKKSKKYSRLSCLRRRRHPQK
VDESDLSEGFDSDSSQGSTKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDM
EDEPGEEGSGRGKSGPKEALKNCVDGSGLGDSKSPSISKIETPDPATNGPGSLSTNDASI
ASNLQAMSTQLFQTKRCFRLAPTFSNILLKPNSEPPVLKDGVDSKPCVNGDLEKPGLAEQ
DDVSDSEESISSNKSCRNERSLQEKLEIVTNEGLLPTVKVFLDWLRTNTDLIIMCAQSSQ
SLWNRLSVLLNLLPSAADLQESGLALCNEVKDMLSGSELPDLSANLLLPEDVALRNLPPL
KNAHKRFNFEQDRPIFSAVEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSE
QDNLLHQAQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPD
TQALCQHLAVVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYI
RCQKDVGKSFERHKLKRQDLDAWNLYKILDSCKQLTVSQASGEDDTTGMVTIITGFQLED
PSAFSVPMQSALQAAANASVEIKNVLEFYKQWKEMG
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgttcttgcatccggtggattatgggagaaaagcagaagaactgctctggagaaaagtt
tactatgaagttatccagctcattaaaacaaataaaaagcacattcacagccgtagcact
ctggagtgtgcgtaccggactcacttgatcgctggcataggattttaccaacaccttctc
ctctacattcagtctcactatcaactggagctgcagtgctgtattgactggactcatgta
acggaccctctcataggctgcaagaaacctgtgtctgcatcggagaaggagatggagtgg
gcacagatggcatgtcacagatgtctggtttatctgggagatctagctcgctatcagaat
gaactggcaggtgtggacacagagttgctggctgagcgattttactatcaagcactttct
gttgcaccacaaattggcatgccctttaaccagctggggacactggcggggagcaaatat
tacaatgtggaagctacctattgctacttacgctgtatccagtctgaagtgtcctttgaa
ggtgcctatgggaacctgaaacggctgtacgacaaagcagccaaaatgtatcaccagttg
aagaaatgtgaaaccaggaagttgtctccaagcaagaaacgatgcaaagacattaagagg
ttgctggtgagctttatgtacctgcagagccttttgcagccaaagagcagctctctggat
tctgagctgacatctctctgccagtctgtgctggaggatttcaacctgtgcttgttctac
ctgccttctcctcctaatctgaactcaactagtgaagatgaagaagagtatgagagtggc
tactccttccttcctgatctcctgatcttccgcatggtgatcatctgccttatgagtgtt
cacagcctcaagagggcagatgaccaggagccacgggagcccttgaactccatagagaag
gaagccgaagctgacttggccaatcatcagcccagcgaggaacaacagaagaatgactgc
aagaaaagcaagaaatactcccgtctctcttgtctgcgtcgccgccgccacccccagaag
gtggacgagagtgacctgagcgagggctttgactctgactctagccagggctccacaaag
ggcagcgatggctcagaaagtggctcagagaagagtgacgaggaggcagaagctgctttt
gatgtggagacggactctgacatgaacagccaagaatctcgttctgacttggaggacatg
gaggacgagccgggtgaggagggaagtggccgaggcaaaagcgggcccaaagaggcctta
aaaaactgtgtggatggcagtgggctgggggactctaagagcccaagcatctctaaaatc
gagactccagatccagcaaccaatgggccagggtccctgagcactaatgacgcaagcata
gccagtaatctccaggccatgtctacccaactgtttcagaccaaacgctgctttcgcttg
gctcccactttcagcaacatcctcctgaaaccaaacagcgagccgccggtcttgaaggat
ggagtagacagcaagccatgtgtcaatggagatctggagaagcctggcttggcagagcaa
gatgatgtatctgactctgaagaaagcatttcaagcaacaaatcctgcaggaatgagcga
tcccttcaggagaagctagagattgtgaccaacgagggtttgcttcccactgtcaaggtg
ttcctggactggctgaggaccaacacggacctcatcatcatgtgcgcacagagctctcag
agcctgtggaacaggctgtctgtgctcctgaaccttctgccttctgctgcagacctgcag
gaatcagggctggccctatgtaatgaagtcaaggacatgctgagcggctctgaactccca
gacctgagcgccaacttgctgctccccgaagatgtggccctgcgcaatctgccccctctg
aaaaacgcacacaagaggtttaactttgagcaggaccgacccattttctcagcagtggag
gagtctgttgttcggatttgctgcatccggagctttggccacttcattacccacttgcaa
ggcagcatcctgcagttcaactcggagcttgggatcttcatcagcatagctcagtcggag
caagacaacctgctgcaccaggcccaagcccaatttcacatggctgctgaggaagctcgt
cggaacaggctaatgagagacatggctcagcttcgactgcagctggaggtttctcagctg
gagggaagtctccagcagcccaaagcccagtcggctatgtctccttatctcgtcccggac
acccaggccctctgccagcacctggctgttgtcaagcagctggccactagcgggaggttc
ataatcatcattcctcgaacagtgattgatggcttagacttcctgaaaaaggagaacgca
ggtgctcgggacagcatccgatatctggaggcagaatttaaaaagggaaacaggtacatt
cgttgccagaaagatgttgggaagagctttgagaggcataaattgaagagacaagattta
gacgcctggaacctctataaaatactggacagctgcaaacagctgacggtgtcccaggca
agcggagaggacgacaccacaggaatggtcaccatcatcacgggctttcagctggaggac
ccaagcgcgttctcggtgcccatgcagtctgccctccaggcagccgccaatgccagcgta
gaaataaaaaacgtcctggagttctacaagcagtggaaagagatgggctga
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