Apteryx mantelli mantelli (North Island brown kiwi): 106493333
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Entry
106493333 CDS
T04298
Symbol
PABPC4
Name
(RefSeq) poly(A) binding protein cytoplasmic 4
KO
K13126
polyadenylate-binding protein
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03015
mRNA surveillance pathway
aam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106493333 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
106493333 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aam03019
]
106493333 (PABPC4)
03041 Spliceosome [BR:
aam03041
]
106493333 (PABPC4)
Messenger RNA biogenesis [BR:
aam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106493333 (PABPC4)
mRNA cycle factors
Stress granule specific factors
106493333 (PABPC4)
Spliceosome [BR:
aam03041
]
Complex C
Other components
Complex C specific factors
106493333 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
106493333
NCBI-ProteinID:
XP_013808807
UniProt:
A0A8B7JCK0
LinkDB
All DBs
Position
Un
AA seq
630 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPAA
AQRVGVATAAQNLAPRPPVAAPTPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatacggcggctagcagctacccgatggcgtcgctgtatgtgggtgacctgcacccc
gatgtcacggaggcgatgctctatgagaagttcagccccgctgggcctgtcctctccatt
cgggtctgcagggacatgatcacccgtcgatccctaggctatgcctacgtcaacttccag
cagccagcagatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
ccaattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacgttttca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctaaacgaccgcaaagtatttgttgggagatttaaatctcgtaaagagcgggag
gctgagttgggagccaaagcaaaggaattcaccaatgtttatataaagaactttggggat
gacatggatgatgaaagactaaaggagctcttcagcaaatatggtaagactctgagtgtt
aaagtgatgacagaccccacgggaaaatccaaaggctttggctttgtgagctttgaaaag
catgaagatgccaacaaggcagtggaggaaatgaatggaaaggatatcaatgggaaaatg
gtgtttgtaggccgagcacagaagaaagtagagcgccaggcagaactgaaaaggaagttt
gagcagctaaaacaagagagaatcagccggtaccagggggttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acaagtgccaaggtgatgctggaagatggacggagcaaagggtttggcttcgtctgcttc
tcctctccagaggaagctacgaaagctgtgacagagatgaacgggcgaattgtgggctcg
aagccattgtatgttgcgcttgcacaaaggaaagaagagcgaaaggcccatctaactaat
cagtacatgcaacgcattgctgggatgagagccttgcctgccaacacaatcattaaccag
tttcagcctgctgctgggggatatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaatcaaatgacgcagatgagacctaacccacgctggcagcaaggg
ggaagacctcaaggcttccagggaatgccgaatgccatgcgccagtctggaccacggcca
gcactgcgccatctggcccctgccggcaatgctccagcctctcgtggcctccccgctgct
gcccagcgagttggtgttgccactgcagcacagaatttagctcctcgtccgccagtagct
gcccccactccccgagcagttcctccttataaatatgcctcaagtgtccgcagcccacat
ccagctgtacagcctttgcaggcacctcagcctgcggtacatgtgcagggacaggaacca
ctaacagcgtccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaa
cgtttgttccctctgattcaagctatgcaccccagccttgcggggaagatcacaggaatg
ctgctagagattgacaactcggagctgctgcacatgctagagtctccagagtcccttcgg
tcaaaggtggaggaggcggttgcagtgttgcaggctcatcaagccaagaaagaagctgcc
cagaaggtgggcgtggttgctgctacctcttaa
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integrated database retrieval system
