Apteryx mantelli mantelli (North Island brown kiwi): 106495072
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Entry
106495072 CDS
T04298
Symbol
PATL1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106495072 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aam03019
]
106495072 (PATL1)
Messenger RNA biogenesis [BR:
aam03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106495072 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
106495072 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106495072
NCBI-ProteinID:
XP_013810924
UniProt:
A0A8B7JJK4
LinkDB
All DBs
Position
Un
AA seq
763 aa
AA seq
DB search
MLIPCSPQSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELE
DKPAAAGERDGPGGDDTDLLGDHEDTLAERLTRLVIDSELEDPAIMRAVQTRTPAQQPAG
LNSSIWDGSAVLRRIRGPLLTQEMPSVSVLDYALPQRPPQAREEERDPSERALPRRSSSP
IIGSPPVRAVPIGTPPKQAAVPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNV
PNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQ
GRVGQMMSPASGFRAFFGAPPAPPPSQPQHPPGPGSHLQSLRPQPQMFRPDTTHLHPQHR
RLLHQRQQQNRSQHRSLNGSVGDRGGHRSGHQEQMRKDPYANLMLQREKDWVSKIQMMQL
QSTDPYLDDYYYQNYFQKLEKLSAAEEVQGDGPKKERTKLITPQVAKLEHTYKPVQFEGS
LGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYER
RYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQERPSDDHFMQIMCIRKGKRLVARIL
PFLSPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTN
LPQSATAPAPTNLHLAAVLQNKFGLSLLYLVLSRGEELQSSDANTELMQDNQWTELMLMA
TRELLRIPQVALAKPVSTPSNLISLFSRYVDQQKLNLLETKLQ
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcccctgctctccccagtccctggaggactgtccgctggacgaagatgaagac
gctttccaggccttaggcgaggaagatgaagatatcgaccagttcaacgatgacacgttt
ggagccggggctgttgatgacgactggcaggaggcccacgagcggctggcggagctggaa
gacaagcccgcggcggccggggagcgggacggcccgggcggggacgacacggacctgctg
ggcgaccatgaggacaccctggcggagaggctgaccaggctggtcatcgacagcgagctg
gaggaccccgccatcatgcgggcggtgcaaaccaggacccctgcccagcagccagcaggg
ctgaactccagcatctgggatggctcggccgtcctgcggcgcatccgagggccgcttctc
actcaggagatgccttcggtgtccgtgctggactacgctctgcctcagagacccccgcag
gcccgggaggaagagcgggacccctcagagcgggcgctgccccgacgttcgtcatccccc
atcatcgggagccccccggtccgggccgtccccatcggcacccctcccaagcaggccgct
gtgcccaacttcaaccagcagattctttgtccgaagcctgtccacatccgggccaccatg
cagcagcgttaccctgctccctatggcgagaggatgtcccccaatcagctctgcaacgta
ccgaattcctccctcctgggccacccgttcccccacagcgtctcgcccgtcctcacccac
ctgcagagagcgcagctgctcggaggagcccaggctggccgaatgtctcccagccagttt
gcccgcgtctccggcctcgtcgggagcccccttccctctgtgaaccccaagctgctccag
ggcagagttgggcagatgatgtctccggccagcgggtttcgtgccttcttcggggctccc
cctgctccccctccatcccagccgcagcacccgccaggccccggatcccacctgcagagc
ctgaggccgcagccgcagatgttccggccggacacgacccaccttcacccccagcaccgc
cgcctcctgcaccagcggcagcagcagaaccggagccagcaccgcagcctcaacggctcg
gtgggggaccgagggggccaccggagcggccaccaggagcagatgcgcaaagacccctac
gccaacctcatgctgcaacgggagaaggactgggtgtccaagatccagatgatgcagctg
cagagcactgatccctacctggatgactattactaccagaattacttccagaagctggag
aagttgtcagcagctgaggaagtccagggcgacggtcccaaaaaggaacgcactaaactc
atcacgcctcaggtggcaaagctcgagcacacctacaagccagtgcagtttgagggctcg
ctagggaagctcacggtctccagcgtgaataacccccggaagatgatagatgcagtcgtg
acctcccgcagcgaggacgacgagacgaaggagaagcaggttcgagacaagaggcgccag
accctcgtgacgatcgagaagacgtacagcctcctcctggacgtggaagactacgagaga
cgctacctcctgagcctggaaggcgagcggccggccctcatgggcgagaggaagcagaag
atatgtgacatgtatgacaatctgagggggaaggcacccgggcaggagaggccgagcgac
gaccatttcatgcagatcatgtgcatccggaagggaaaacgcctcgtggcccggatcctc
cccttcttgtcaccagagcaagcagctgatgtcctcatggccacagccaggaacctgccc
ttcctcatcaagaaggatgctcaggacgaggtgctgccctgcctgttgaggcccttctcg
cacgttctctatcaccttcccttggggacggtcaccagccttgtgcagcagctaacgaac
ctacctcagagcgcgaccgcgccagcacccaccaacctgcacctcgctgctgtgctccaa
aacaagtttggcctgtccctgctgtacttggtcctgagccgcggagaggaactgcagagc
tcggatgcgaacacggagctaatgcaggacaaccagtggacggagctgatgctcatggca
acccgggagctgctgcggatcccccaggtggccttggcgaagccggtgtccaccccctcg
aacctgatctccctcttctctcgctacgttgaccagcagaagctgaacttgctggagaca
aaattgcagtaa
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