Apteryx mantelli mantelli (North Island brown kiwi): 106495542
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Entry
106495542 CDS
T04298
Symbol
COL27A1
Name
(RefSeq) collagen type XXVII alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106495542 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aam00536
]
106495542 (COL27A1)
Glycosaminoglycan binding proteins [BR:
aam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106495542 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
GH131_N
Motif
Other DBs
NCBI-GeneID:
106495542
NCBI-ProteinID:
XP_013811490
UniProt:
A0A8B7JKA1
LinkDB
All DBs
Position
Un
AA seq
1747 aa
AA seq
DB search
MEPESEPVSKLRATAAGRGGLCFLWTVLCFTWFLGFTQGNSEDVDVLQRLGLAGKKPSSG
WSLSRAVPQGVIPFKLGVIFTQQARIEAPVSTIFPAGSSTDLVLVLSLCSHRINNAFLFA
VKSKKKKLQLGVQFVPGKIIVYVGHKRSVYFDYDVHDGQWHNMAINIRGQTVTLFTSCGK
RRVHADLHFKKDEALDPHGSFLFGKMNQHSVQFEGAICQFDIYPSAKAAHHYCKYLKKQC
RQADTYRPNLPPLIPLLPRDPNASPSTPQHMEPSLQGLKNLTTVTPSLELGRVTAPLKTR
SSGATTIPSVSSTLPLPRLTNKATKVTVAPSPVSSSTEMQPPTRSLARVTAATLRISQPT
PSTRMGKTPLPTARKAPPTSQSPAVTSRKESKQETKNKISQKPAIEPSETPSTVKPMRRM
TDNTTSNVHFVTLKQTAQNPSNRPVPKKHVPPPARKADPSDVPLVYSKPPLGSARPVTRA
GAQAFNLTTPAATDGYQIFDPLGPTPFPFLLGYPGAKGERGPQGPPGLPGLPGPPGKRGS
RGPPGPHGNPGSPGPPGLKGQKGDPGLSPGKARNGPKGDVGLPGLTGFPGPPGRKGYKGY
PGPPGHPGEQGERGPDGSPGAKGYPGRQGLPGPIGEAGPKGNRGYIGLPGLFGLPGADGE
RGIPGVPGKRGKMGRPGFPGDFGERGPPGIDGNPGELGAPGPPGVLGLIGDMGSVGPIGY
PGPKGLKGLMGNPGEHGLKGDKGDQGGAGVPGDIGFQGDKGSQGLPGVPGARGKPGPLGK
VGDKGPVGFPGPPGPEGFPGDIGPPGENGPEGLKGKPGARGLPGPRGLPGQEGDEGPLGP
PGVPGPEGRPGRKGFPGRPGPDGPKGEPGNRGRPGKVGEQGLMGFIGPVGESGIVGEKGD
RGSVGPPGPPGVKGSMGHPGAPGGVGFPGIPGPIGPAGVRGAPGIRGMKGRRGARGPDGP
VGEPGSRGVKGRPGEPGKLGPDGLQGKIGETGETGSRGFPGIQGPSGPPGAKGAPGDPGP
QGPQGPPGPLGEIGHKGPPGSMGQPGLAGEPGMKGDPGQLGVPGEQGLIGQRGESGLEGD
SGPPGPDGVKGDKGEQGLEGEKGEKGDEGLKGKEGPLGHPGITGVRGPEGKPGKQGEKGK
PGQKGSKGFQGQLGETGSPGKEGPKGNQGPKGSRGTLGPMGAPGRMGVQGEPGLKGYQGH
AGPPGPAGPPGPKGEKGEQGDDGKVEGPQGPPGDRGPVGDRGDRGEPGDPGYPGQEGLDG
ERGKPGQQGLPGDPGPPGQPGAKGSKGDVGQKGKQGARGSAGSRGSPGTLGLPGPRGVVG
RQGQEGAPGVDGVPGKDGMPGMLGEQGDDGEEGVTGTSGKRGNPGIPGLPGAQGPPGFKG
ERGLPGQTGQTGKRGPPGGTGLPGSPGDPGPKGQPGDFGEAGFPGIAGMFGPKGPPGDLG
FKGIQGPRGPPGLMGKEGIIGPLGILGPTGSPGPKGDKGSRGETGLQGPRGPPGPRGHPG
PPGPPGIPASFQQDGFGAAFQSLIDSNTALKTEGYQHPELLMLDHGGEIFKTLHYLSNLI
QSIKRPLGTKENPARICRDLMNCEQKMNDGTYWIDPNLGCSSDTIQVICNFTNGGQTCLS
PITVSKLDFDIGRVQMNFLRLLSSEVVQHITIHCLNTSVWREGSSEKPSEKAVRFKAWNG
QMFEAGGQLKPEVAADDCKIKDGRWHRTLFSFRTQDPHQLPIVNIYNLPPSEPGKQYHLE
VGPVCFL
NT seq
5244 nt
NT seq
+upstream
nt +downstream
nt
atggagccggaatcagagccggtctccaaactcagagctaccgcagcaggcaggggggga
ctctgctttctctggactgttctatgttttacctggttcctgggattcacacagggaaat
tctgaagatgtggatgttcttcaaagactgggcctggcagggaagaagccatcgagcgga
tggtccttgtcacgtgcagttcctcagggggtcattcctttcaaattgggggtcatcttc
actcagcaagcacgtatcgaagcaccggtcagtaccatcttccctgcaggctccagcact
gacctggtcctggtgctgagcctgtgctcccaccgtatcaacaacgcttttctctttgcg
gtcaagagtaaaaagaaaaaactgcagctgggggtccagtttgtgcctgggaagattatt
gtttacgtgggccacaagcgctctgtatattttgattacgatgtccatgatggccagtgg
cacaatatggccatcaatatccgaggccagacagtcactttatttacttcttgtgggaag
cgcagagtacatgcggatttgcattttaaaaaggacgaggcattggatccacacggatct
ttcctctttggaaagatgaaccagcactccgtgcagtttgaaggagccatctgccagttc
gatatttatccttctgccaaggcagctcatcattactgtaaatacctgaaaaaacagtgc
aggcaagcagatacctaccggccaaacttgccccccctcatcccactcctgccgagggat
cccaatgcctccccaagtaccccccagcacatggagccctcgcttcagggtctgaaaaac
ctgaccactgtgaccccatccttggagcttggcagggtcactgcacccctaaagactcgg
agctcaggtgcaacaaccatcccatcggtctcatccacattgcccctgccaagactgaca
aacaaagccacaaaggtcacagtggcaccgtctcctgtttcatcgagtactgaaatgcag
ccgcccacccgttcactcgctcgggtgacagcggcgaccctcaggatatctcagccaact
cccagcacacgcatggggaaaactccccttcccactgccagaaaggccccacctacgagc
cagagccctgccgtgaccagcaggaaggaatccaagcaagagaccaaaaacaagatcagc
caaaaaccagccattgagccctctgaaacacccagtactgtaaagccaatgagaaggatg
accgataacacaaccagcaatgtccactttgtgaccctaaagcaaaccgcgcagaaccca
agcaataggcccgttccaaagaagcatgtgccgccccccgccaggaaagcggatcctagc
gacgtccctctggtgtactccaaaccgcctctggggtctgctcgtcccgtcaccagagcc
ggagcacaggccttcaacctcacaaccccagctgcaacggatgggtatcaaatctttgac
cccctcgggcctactccatttccatttttactgggatatccaggagcaaaaggagagaga
ggaccccagggtccaccaggtctaccgggcttaccaggaccacctggcaagagaggatcc
cgaggtcctcctggtcctcatggaaaccctggctcacctggaccccccggcctgaaaggt
cagaaaggtgatcctggactgtcgcctggaaaagctcgcaacggacctaagggagatgtg
ggcttacctggtttgactggcttccctggaccacctggtcgaaagggatataaaggctac
cctggaccaccaggtcaccctggagagcagggcgaacgaggaccagacggaagtccaggt
gccaaaggttatcctggcaggcagggtttacctggcccaataggggaagctggtccaaaa
gggaatcggggatatataggtctcccaggattatttgggctgccaggggctgatggagaa
cgagggatccctggagttcccgggaagaggggcaagatgggtaggccgggttttcctggt
gattttggagaacgaggacctccaggcatcgatgggaacccaggagaattgggagcccca
ggtcctcctggagtccttggactcattggtgacatgggctctgttggacctataggctat
ccaggaccaaaaggcttaaaggggctgatgggaaaccctggagaacatggactgaaaggt
gataagggtgatcagggaggagcaggtgttccaggagatatcggcttccaaggagacaag
ggcagccagggtttacctggggtcccgggggcacgagggaagccaggacccctgggaaaa
gttggtgacaaaggtccagtcgggtttccgggaccaccgggccctgagggctttccagga
gacattggcccaccaggagaaaatggccctgaaggcctaaaggggaagccaggagcacga
ggtttacctgggccaagaggactgcctggacaagagggagatgaaggacccttaggacca
ccaggagtccctggtccagagggtcgacctggccggaaggggtttccaggaagacctggt
cctgatggtccgaagggtgagccaggaaaccgtggccgaccagggaaagttggtgagcag
ggtctaatgggtttcattggtccagtaggggagtctggaatagtgggagaaaagggtgac
cgtggctcagtgggacccccaggccctccaggagtcaaggggtcgatggggcaccctgga
gcaccaggaggagtgggttttcctggaatccctggaccaataggtccggcaggagtccgc
ggtgcaccaggaataagagggatgaaaggccgcaggggtgccagagggcctgatgggcca
gtaggcgagccagggtcacgaggtgtcaagggacgtccaggggagcccggcaaactgggg
ccggatgggctgcaggggaagataggagagactggggagacgggatcacgtggcttccca
ggtatccaaggaccttctggacctccaggagcgaaaggggctccaggcgacccgggaccg
caaggaccacaggggccacctgggcctttgggagaaatcgggcataagggaccgcctggc
tcaatgggacaacctggccttgcaggtgaacctggcatgaagggtgatcctggacagttg
ggagtccctggagagcaaggcctcatcggtcaaagaggagaatcggggctggaaggggac
agcggaccacctgggccggatggtgttaagggagacaaaggagagcaaggcctggaagga
gagaaaggagaaaaaggcgatgaaggactgaagggaaaagaggggcctcttggacatccg
ggaatcacaggtgtccgaggaccagaagggaaaccaggaaaacagggggaaaagggcaag
cctggccagaagggcagcaagggctttcaggggcaactcggcgagacaggatctccgggg
aaggagggcccgaaggggaaccaaggccctaaaggatcccgaggtaccctgggacctatg
ggtgctccgggaaggatgggcgttcaaggggaaccaggcttaaagggttaccaggggcat
gcaggaccaccagggccagctggaccaccagggccaaagggggaaaagggagaacaaggt
gatgacgggaaggtagaaggcccgcagggaccacccggagacagaggccccgttggtgac
agaggcgatcgaggggagcctggagaccccggttatcctggtcaagaagggcttgatgga
gaaagaggaaaacctggacagcaaggtttacctggggatcctggaccaccaggccagcca
ggagcaaagggatccaaaggtgatgtgggtcaaaaaggaaagcaaggagcacggggcagt
gcagggagcagaggctcaccgggcacccttgggctaccaggacctagaggagtggtgggc
aggcagggtcaagagggtgcccctggagtggacggagtgcctgggaaggatggcatgcct
gggatgctgggagagcagggagatgatggggaagagggtgtaacagggacgtcaggcaaa
agagggaaccctggcataccaggactcccaggagcacagggaccaccaggatttaagggt
gaaagaggattgcctgggcagactggccaaacagggaagcgaggaccaccaggcggaacg
gggcttccagggagcccaggtgatccaggacccaaaggacagccgggagactttggtgag
gcgggatttccaggcattgcaggcatgtttgggccaaaggggcccccaggagaccttggt
ttcaaaggcattcagggaccacgtgggccgcctggtctcatgggaaaagaaggaattatt
ggtccacttggtattctaggtcccacgggaagtccaggtcccaagggagacaaaggcagc
cgtggagaaacgggtctgcaaggtccaaggggtcctccaggcccacgaggacaccctggc
cctccgggaccgccaggaattccagcctcatttcaacaagatggctttggtgcagctttc
cagtcactaatcgactcgaacactgcgctcaagacagagggttaccaacatccagaactt
ctgatgctggaccatggaggggagatctttaagactctacactacctcagcaacctcatt
cagagcatcaaaagacccctgggaaccaaggagaaccctgcacgcatctgtcgagacctc
atgaactgtgaacagaagatgaacgatggtacctactggattgacccaaatcttggctgt
tcttcagacaccatacaggtcatctgtaacttcaccaacggtggacagacatgtctcagc
cccatcactgtctccaagctggattttgacatcggtagagtccagatgaacttccttcgc
cttctgagctcagaggtggtccagcacataaccatccactgcctgaatacctccgtgtgg
cgggaaggctcatctgaaaaaccttcagaaaaagccgtgcgctttaaggcctggaatgga
cagatgtttgaggcaggagggcagctcaagccagaagtggcagctgatgattgcaagatc
aaagacggacgctggcatcggactctcttttcgtttcggacccaggaccctcaccagctg
ccaatcgtcaacatctacaaccttcccccatccgagccaggaaagcagtatcacctcgag
gtcggccccgtgtgcttcctttga
DBGET
integrated database retrieval system
