Apteryx mantelli mantelli (North Island brown kiwi): 106496801
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Entry
106496801 CDS
T04298
Symbol
UPF1
Name
(RefSeq) UPF1, RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam03013
Nucleocytoplasmic transport
aam03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106496801 (UPF1)
03015 mRNA surveillance pathway
106496801 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aam03019
]
106496801 (UPF1)
Enzymes [BR:
aam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106496801 (UPF1)
5.6.2.5 RNA 5'-3' helicase
106496801 (UPF1)
Messenger RNA biogenesis [BR:
aam03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106496801 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106496801 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
106496801
NCBI-ProteinID:
XP_013813015
LinkDB
All DBs
Position
Un
AA seq
1044 aa
AA seq
DB search
MQVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACV
VYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLL
GFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRA
RQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEA
DYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLW
KGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPS
HVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFAIPGTSQSN
LPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGGVTGLSQY
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgcaggttaatggacctgatggcattctgcagaatggagctgtggatgataatgtagct
aaaaccagtcagcttctggcagagctgaattttgaagaagatgaggaagatacctattac
acaaaggaccttcctgtgcatgcttgcagctactgtggtatccatgacccagcctgtgtg
gtttactgcaacaccagcaaaaaatggttctgtaatggtcgtggaaatacatctggcagc
cacattgttaatcatcttgtgagagcgaagtgcaaagaggtgactctccacaaagatggg
cctctgggagagactgtcttggagtgttataactgtggatgtcgtaatgtgtttctcctg
ggctttattccagcgaaggcagactctgtggtggttttgctgtgcaggcaaccatgtgcc
agtcagagcagtttaaaggatattaactgggacagttcacagtggcagcctcttatccaa
gaccgctgtttcctttcatggctggtaaagattccatctgaacaggaacagctgagagca
cgtcagattacagctcaacagattaacaaactggaagaactttggaaggaaaatccatct
gcaacccttgaggatttagaaaagcctggtgttgatgaagaaccacagcacgtcctactt
agatatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggca
gactatgacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggac
ttgggcttgaacaagaaaagaattgcttatttcactttgccgaagactgattcagacatg
cgtcttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttatgg
aagggaattggtcatgttatcaaagttcctgataattatggtgatgagatagccatcgag
ctaagaagcagcgttggagcacctgtggaagttactcataacttccaagtggattttgta
tggaagtctacttcatttgacagaatgcaaagtgctttaaaaacatttgctgtggatgag
acttcagtgtctgggtacatctatcacaagctgttaggccatgaggtagaagatgtaatt
attaaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattct
caggtttatgctgtgaagactgtcttgcagcgtcctctgagtcttattcagggtccccct
ggtacaggaaaaacagtgacatcggccacaattgtctatcatctggctagacagggcaat
gggcctgtgttagtctgtgctccgagtaacatagctgtagatcagttgactgagaagatt
catcaaactggactgaaagtggttcgcctgtgtgctaaaagtcgtgaggcaattgactct
cctgtatccttcttggcattgcacaaccagatcagaaacatggatagcatgccagagctt
cagaaactgcagcagcttaaagatgaaactggagaactgtcgtctgctgatgagaaacgt
taccgtgcactgaagcgaacagcagagcgtgaattacttatgaatgcagatgtgatctgt
tgcacatgtgtgggagctggcgatccaagacttgcaaaaatgcagttccgctccattctg
attgatgaaagcacacaggctactgagccagaatgtatggtgccagttgtcctgggagca
aaacagctaattcttgtaggtgatcactgtcagcttggtcctgttgtgatgtgtaagaaa
gctgcgaaggctggcctgtctcagtccctctttgagaggcttgtggtgctggggatccgt
ccgattcgccttcaagtgcagtatcgcatgcatcctgcacttagtgcttttccatccaat
atcttctatgagggttcactccagaatggtgttactgcagcggaccgtgtgaaaaaagga
tttgatttccaatggccacagccagataagccaatgtttttctatgttacacaaggacag
gaagaaattgccagttcaggcacctcttacttaaacaggacggaagcagccaatgtggag
aagataactacaaagttattgaaagctggtgccaaaccagatcagattggcattatcact
ccttatgagggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcat
acgaaactttaccaggaagtggaaattgcgagtgtggatgccttccagggacgagagaag
gactttattatcctttcttgtgtaagggccaacgaacaccaaggaataggatttctgaat
gaccccaggcgtcttaatgtggctcttacaagagcaaggtatggagtaattattgttggg
aacccaaaagcactgtctaaacaaccactttggaatcacctgctgaattattacaaggag
cagaaggttctggtggagggaccactgaataacctccgggaaagccttatgcaattcagc
aagccccggaaacttgtcaataccatcaatccaggtgcccgttttatgactactgccatg
tatgatgcgcgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgc
ccgtccaacatgtacttccaaacccatgaccagatcgggatgattagtgccggccccagc
catgtcactgctatgaacattcctatccctttcaacctcgtgatgccaccgatgccacca
ccgggatacttcggccaggctaatggaccagctgcaggacgtggggcaccaaaaggaaag
actggtcgtggtgggcgtcagaaaaaccgttttgcgattcctggaactagtcagtcaaac
cttccaaatagtcaagcaagccaagacgtggtgtcccagcctttctcccagggtccactg
actcaagggtatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaa
ccagaattatcacaggacagttaccttggtgatgagtttaaatctcagatcgatgtggcg
ctgtcacaggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacggga
ctgtcacagtattag
DBGET
integrated database retrieval system
