Apteryx mantelli mantelli (North Island brown kiwi): 106499741
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Entry
106499741 CDS
T04298
Symbol
COL11A1
Name
(RefSeq) collagen type XI alpha 1 chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
aam
Apteryx mantelli mantelli (North Island brown kiwi)
Pathway
aam04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aam00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106499741 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aam00536
]
106499741 (COL11A1)
Glycosaminoglycan binding proteins [BR:
aam00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106499741 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
106499741
NCBI-ProteinID:
XP_013816742
LinkDB
All DBs
Position
Un
AA seq
1807 aa
AA seq
DB search
MEMQRWSTRWKTKRWLWDSAVTVLIAFTLLLQAAEVRGAEPVDVLKALEFHNSPEGVSRT
AGFCTNRRDSKGSDVAYRVSKTAQLSAPTKQLYPDGDFPEDFSILMTVKPKKGIQSFLLS
VYNEQGIQQVGVEVGRSPVFLFEDQNGKPAPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKNTKPLERSDKTIVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAYDYCE
HYSPDCDSPVPNAAQAQDPQVDEYTPEDFIEYDYEYGDADYKETDSVTEGPPLFEETVAQ
TEANAVDEFQEYSVAETDYGAQTEAPSRTTEANEQNPVEEVFAEEYITGEDYDKKTEETE
YGSRGVNLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPAETDITETSVIGH
GAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGDPGERGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPPGPMGLTGR
PGPVGGPGSAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGGRGMPGEPGAKGD
RGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGLRGEDGEVGPRGLPGEAGPRGLLGPRGT
PGPPGQPGIAGVDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGPIGPPGEKGPQGK
PGLPGLSGSDGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGLKGDRGEVGQPGPRGEDGPEGPKGRAGPSGDPGAAGPAGEKGKLGV
PGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSRGPRGPTGK
PGLKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGIPGK
DGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGAAGTAGPIGLPGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPSGSPGEDGDKGEIGEPGQKGS
KGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGEPGE
AGNPGPPGESGTSGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGATGAEGRQGEKGA
KGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPLGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGDAGISGPAGPLGP
PGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLPIQSPKKTRRSPD
YMLSDVGDNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQLCHPDFPD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKENPGSWFSEFKRGK
LLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDASSDSYDKALRFLGSND
EEMSYDNNPYIKALHDGCASRKGYAKTVIEINTPKIDQVPIVDVMINDFGDQNQKFGFEV
GPVCFLG
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacaaggtggaaaacgaaaaggtggctctgggactccgct
gtaaccgtgctcatcgctttcactctccttctccaggctgcggaggtcagaggagctgaa
ccagttgatgtgctaaaagcgttagaatttcacaattcaccagaaggggtatcaagaaca
gcaggattttgcacaaatagaagggattcaaaaggatcagatgtcgcctacagagtttca
aaaactgcacagctcagtgccccaacaaagcagctgtacccagatggagactttccagaa
gatttttcaatattaatgacagtaaaacctaaaaagggtatccagtccttccttctgtct
gtctacaatgaacaaggaattcagcaagtaggtgttgaagttggtagatcccctgtcttc
ctgtttgaagaccaaaatggaaaacctgccccagaagactatcctcttttcagaacagtc
aacattgctgatggcaagtggcatcgagtagctattagtgtggaaaagaaaagcgttacc
atgattgttgactgtaacaaaaaaaacacaaaaccacttgaaagaagtgacaaaacaatt
gtggacaccaatggcatcactgtatttggaaccaggattctggatgaagaagtttttgag
ggtgaaatccagcagctgttgattatagctgaccccagagctgcatatgactattgcgag
cattatagcccagactgtgattccccagtgcccaatgctgctcaggctcaagatcctcaa
gttgatgagtatacaccagaagattttatcgaatatgactatgagtatggggatgcagat
tataaagaaactgactctgtaacagagggacccccactatttgaggagacggtagcacaa
acagaggcaaacgctgtggatgaattccaagaatatagcgtagctgaaactgactacggg
gcccagacagaggctccctccagaacgactgaagcaaatgagcaaaatcctgttgaagaa
gtctttgctgaagaatacataactggagaggattatgataaaaaaactgaggaaactgaa
tatggaagcagaggagtaaacctcagtgaatctgatcttctggtagatggcgatttaggc
gaatatgatttttatgaatataaagaatatgaagagaaaccaactgattccactaatgag
gagtttggtccaggtgttcctgcagagactgatatcacagaaacaagtgtgattggacat
ggggcttatggagagaaaggacaaaagggagaaccagctgtgattgaacctggtatgctc
attgaaggaccaccgggaccaagaggacctgctggtcttacaggtcccccaggtttacaa
ggtcctgttggtcctccaggtgaccctggtgaaaggggtccacctggtcgccctggtctc
cctggtgctgatggtttagcaggtcccccaggtaccatgttaatgttgccgttccgcttt
ggtggagacggtgaaaagggtccaacaatctcagctcaggaagctcaagcacaagctatt
cttcagcaagctaggattgctatgagagggccacctggtcccatgggactcactggaaga
ccaggtcctgtgggtgggcctggatcagcaggtgctaaaggtgaaagtggtgagccaggt
ccccagggtcctcgtggtgttcaaggtgcccctggtccaagtgggaaagctggtaaaagg
ggacgccctggtgctgatggtggcagaggaatgccgggagaacctggtgcaaagggtgac
agaggatttgatggtcttcctggcctccctggtgacaaaggtaacaggggagaccgtggc
ccacagggacctcctggcttacctggtgaagatggattaagaggagaagatggagaagtt
ggaccaagaggtctcccaggtgaagctggtccacggggattactgggccccagaggtaca
cctggtccccctggacaacctggcattgcaggtgttgatggcccctcaggcccaaaagga
aacatgggtcctcaaggggaaccaggacctcctggtcaacaaggaatcccaggcccacaa
gggcttcctggtccacaaggtcctattggacctcctggtgaaaaaggacctcaaggcaag
cctggccttcctggcctttctggttctgatgggcctcctggtcatcctggcaaagaaggt
cagtctggagagaaaggtgcattggggcctccaggtcctcagggtccaattggctatcca
ggtcctcgtggtgtaaagggagctgatggtgtccgtggtctcaaaggctccaaaggtgaa
aagggtgaagatggtttcccaggatttaaaggtgacatgggccttaaaggcgaccgggga
gaagttggccagccaggtccacggggagaagacggcccagaaggtccaaaaggtcgagca
ggtccatctggggacccgggtgctgctggtccagctggggaaaagggtaagcttggtgta
ccaggattgccaggatatccaggaagacaaggtccaaagggctcaaccggtttcccagga
tttccaggtgcaaatggagagaaaggtgcaaggggactacatggcaaaccaggcccaaga
ggacagcgaggaccaacaggtccaagaggctcaagaggtcccagaggtcccactggaaaa
ccaggtctgaagggtactgcgggcaatgatggtcctcctggcccaccaggtgaaagggga
ccacaagggcctcagggacctgttggattccctggaccaaaaggacctccaggaccacct
ggaaaagatggcttgcctgggcacccaggacagcggggtgagactggtttccaaggaaaa
actggtcctcctggtcctggtggtgttgttggccctcagggtcctactggtgaaactggc
ccaattggggaaagaggtcatccgggtcctcctggcccaccaggtgaacaaggtctccca
ggtgccgcaggaaaagaaggtgctaagggtgacccaggccctcaaggtattcctgggaaa
gatggaccagcaggtctccgtggtttccctggagaaagaggccttccaggagctcagggt
ccagctggtctgaaaggaggggaaggtccacaaggcccacctggcccagttggttcacca
ggggaacgtggagcagcaggtactgctggcccaattggtctacctggtcgtcccggacct
cagggtcctccaggccctgcaggggagaagggtgctcctggtgaaaaaggtcctcaaggt
ccagctggacgtgatggagtacagggtcctgtaggactccctggtcctgctggtccaagt
ggttctcctggagaagatggtgacaagggtgaaattggtgaaccaggtcagaaaggcagt
aaaggtgacaagggagaaaacggtcctccaggtccaccaggtctccagggtcctgttggt
gccccgggtatagctggcggtgatggggaaccaggcccaagaggtcagcaagggatgttt
gggcagaaaggtgatgaaggtcctcgaggtttccctggccctccaggccctattggttta
cagggtctgcctggcccaccaggtgaaaagggtgaaaatggcgatgtgggcccaatgggt
ccacctggccctccaggtccaagaggtccccagggtcctaatggagctgatggtcctcaa
ggccccccaggctcaattggttctgttggaggtgttggtgaaaagggtgaacctggagaa
gctggtaaccctggacctcctggagaatctgggacatctggtccaaaaggtgaaagagga
gaaaaaggcgaggctggtccacctggagcagcaggaccaccaggtgctaaaggacctcca
ggcgatgacgggcctaagggtaaccccggcccagttggttttcctggagatcctggtccc
cctggcgaacctggtcctgctggtcaagatggtgttggtggagagaagggtgaagatggt
gatcctggtcaacctggtccaccaggtccttcaggtgaagctggcccacctggtccacct
ggaaagagaggacctcctggagccactggtgctgaaggcagacaaggtgaaaaaggtgca
aagggtgaacctggtgcagaaggtgctcctggaaaaacaggtccagttggtcctcaggga
cctgcaggaaaacctggcccagagggtctccgaggcattcctggccctgtgggagaacaa
ggtctacctggagcaccaggtcaggatggccctcctggacctctgggtccacctggcttg
cctggcttgaaaggagatccaggttccaaaggagagaagggacatcctggtttgattggg
ctgattggacctccaggagaacagggtgaaaagggtgacaggggtctccctggcccacag
ggatctcctggagccaagggtgatgcaggaatttccggtcctgctggtccactcggaccc
cctggtcctcctggtttacctggtccccaaggtccaaaaggttccaaaggatccagtggc
cctgctggtcaaaagggtgacagtggtttacctggtccacccggtcctccaggtcctcca
ggtgaggtaatccagccactgccaatccagtcacccaaaaagacaagaagatctcctgat
tacatgttatccgacgttggtgataatattctggattattctgatggcatggaggagatc
ttcggttcactgaattcattgaagcaagacattgagcatatgaagtatccaatgggcacg
cagaacaacccagcccgaacttgcaaagatctgcaactctgccacccagacttcccagat
ggggaatattggattgatcctaaccagggctgttctggagactccttcaaagtgtactgc
aatttcacagcaggtggggaaacttgcatctacccagataagaaatctgaaggagttaga
atttcctcatggccaaaggagaacccaggatcttggtttagtgaatttaagagaggcaaa
ctgctttcttatttggatgttgaaggcaattccattaatatggtccaaatgacattcctg
aaactactgagtgcctctgccagacaaaatttcacttacaactgtcatcagtcagtagct
tggcatgatgcatcatctgacagctatgacaaagcactgagattcttaggatcaaatgat
gaagagatgtcttatgacaacaatccttacatcaaagctcttcacgatggctgtgcatca
agaaagggctatgcaaagacggtgattgaaatcaacacacctaaaatagaccaagtgcct
atcgttgatgtgatgatcaatgactttggtgatcagaatcagaagtttggatttgaggtt
ggtcctgtctgtttccttggttaa
DBGET
integrated database retrieval system
