Acidianus ambivalens: D1866_12025
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Entry
D1866_12025 CDS
T06309
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
aamb
Acidianus ambivalens
Pathway
aamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1866_12025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamb03019
]
D1866_12025
Messenger RNA biogenesis [BR:
aamb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
D1866_12025
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
D1866_12025
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Paralog
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GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
RRP40_S1
KH_1
S1
Motif
Other DBs
NCBI-ProteinID:
QGR22614
UniProt:
A0A650CXM6
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All DBs
Position
2092277..2093020
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AA seq
247 aa
AA seq
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MDSNQNSNNKIYFKSRSIVVPGDLIAEGSFQIPWSPYIYKLGNKYYSTVIGIVDPKDSTF
EIIPLEGSHYYPKVGDTVIGLIEDVELYGWIVDIKAPYSAYLPALSLLGRPVNIGEDLRK
YLDIGDYVIARVESFDRTINPVLTVKGKGLGRLNNGKIIDIMPVKVPRVIGKNKSMYELL
TSETGCEMIVAQNGRIWANCPSKDMEEVLFLSIKTIERESHIKGLTDRIKELIEKKKGEL
NVTNSKA
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atggattccaatcaaaattctaataacaagatttactttaaatctagaagtatagtagtg
cccggcgatttaattgcagaaggcagttttcaaataccttggtctccatatatttataag
ctcggcaataagtattattctacagttataggtatagtagaccctaaggattctactttt
gaaataataccacttgaaggatctcattactatccaaaagtaggagatacagtaataggg
cttatagaagatgtagaattatatgggtggatagttgacattaaagccccctattcagca
tatttgcctgcactctctctattgggaagaccagtcaatataggcgaagatttaagaaaa
tatcttgatattggagattatgtaatagctagagtagaaagttttgataggacaataaat
ccagtattaactgtaaaaggaaaaggattaggaagattgaataatggtaaaataatagat
ataatgccagtaaaggtcccaagagtaataggtaagaataagagtatgtatgaattatta
acgtcagaaacaggatgtgaaatgatagttgctcagaacggtcgtatatgggctaattgc
ccatctaaagatatggaagaagtgttatttttgtctataaaaactatagaaagggaatct
catattaaaggtttaactgataggataaaggaactaatagaaaagaaaaaaggtgagtta
aatgttacaaattcaaaagcctaa
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