Arvicola amphibius (Eurasian water vole): 119799759
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Entry
119799759 CDS
T08327
Symbol
Fdft1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp00100
Steroid biosynthesis
aamp01100
Metabolic pathways
Module
aamp_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
119799759 (Fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
aamp01006
]
119799759 (Fdft1)
Enzymes [BR:
aamp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
119799759 (Fdft1)
Prenyltransferases [BR:
aamp01006
]
Terpene biosynthesis
Squalene/phytoene synthase
119799759 (Fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Octopine_DH
HAUS4
Motif
Other DBs
NCBI-GeneID:
119799759
NCBI-ProteinID:
XP_038165544
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All DBs
Position
13:51024066..51048155
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AA seq
417 aa
AA seq
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MEFVKCLGHPEEFYNLLRFRMGGQRKFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQA
LDGEMRHAVCVFYLVLRALDTVEDDMTISVEKKIPMLRNFHTFLYEPEWRFMESKEKHRQ
VLEDFPTISLEFRNLAEKYQTVIADICQKMGCGMAEFVDKHVTSKQDWDKYCHYVAGLVG
IGLSRLFSASEFEDPLVGEDTECANSMGLFLQKTNIIRDYLEDQQEGREFWPREVWGRYV
KKLEDFAKPENIDVAVQCLNELITNTLHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATL
AACYNNQQVFRGVVKIRKGQAVTLMMDATNMPAVKAIIQQYIEEIYHRIPNSDPSSSETK
QVISTIRTQSLPNCQLISRSHYSPIYLSFVMLLAALSWQYLSTLSQVTEDYMQTGEH
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgtgaagtgtctcggccacccggaggagttctacaacctgctgcgattccgc
atgggaggccagcggaagttcataccaaagatggaccaggactcgctcagcagcagcttg
aagacttgctacaagtatctgaatcagaccagtcgcagcttcgccgctgtcatccaggcg
ctggatggggaaatgcgccacgcagtgtgtgtgttttatctggttctccgcgctctggac
accgtggaagatgacatgaccatcagtgtggagaagaagatcccgatgctgcgcaacttt
cacactttcctctatgaaccagagtggcgcttcatggagagcaaggagaagcaccgccaa
gtgctggaggacttccccacgatctccttggagtttagaaatttggcggagaaatatcaa
acagtgattgctgacatctgccagaaaatgggatgtgggatggcagaatttgtggacaag
catgtgacttccaaacaggactgggacaagtattgtcactacgttgctgggctggtagga
attggcctttctcgtctgttctcggcctcagagtttgaagaccccttagttggtgaagac
acagaatgtgccaactcaatgggtctgttcctgcagaaaacaaatatcattcgtgattac
ctggaagaccaacaagaaggaagagagttttggcctcgagaggtgtggggcagatatgtt
aagaagctggaagactttgctaagccagaaaacatagatgtggccgtgcagtgcttgaat
gaactcataaccaacaccctccaccatatccctgacgtcatcacctacctgtcaaggctc
cggaaccaaagtgtgtttaacttctgtgctattccgcaggtaatggccatcgctacactg
gcggcctgttacaacaaccagcaggttttcagaggggtagtgaagattcggaaggggcaa
gcagttaccctcatgatggacgccaccaacatgccagccgtcaaagctatcatacaacag
tatatagaagagatttatcaccggatccccaactcagacccatcttccagcgaaaccaag
caggtcatctccaccatcaggacacagagccttcccaactgtcagctcatctcccgaagc
cactactcccccatttacctgtcgtttgtcatgctcttggctgccctgagctggcagtac
ctgagcaccctgtcccaggtcacagaagactatatgcaaacaggagaacactga
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