Arvicola amphibius (Eurasian water vole): 119799937
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Entry
119799937 CDS
T08327
Symbol
Chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
119799937 (Chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aamp03036
]
119799937 (Chd8)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
119799937 (Chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_Hrp3
MUN
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
119799937
NCBI-ProteinID:
XP_038165767
LinkDB
All DBs
Position
13:68177206..68244165
Genome browser
AA seq
2588 aa
AA seq
DB search
MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGN
SSASDLVPQPEETAPPELPKESTAPAPESLTLHDYTTQPTSQEQPAQPVLQTSTPTSGLL
QVSKSQEILSQGNPFMGVSATAVSPSNTGGQPSQSAPKIVILKAPPNSSVTGAHVAQIQA
QGITSTAQPLVAGTANGGKVTFTKVLTGTPLRPGVSIVSGNTVLATKVPGSQAAVQRIVQ
PSRPVKQLVLQPVKGSAPAGNPGAAGPPLKPAVTLTSTPTQGESKRITLVLQQPQTGGPQ
GHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQPPSS
QPQPQPPPTAQPLTLSSVQQAQIMGPGQSPGQRLSVPLKMVLQPQAGSSQGASSGLSVVK
VLSASEVAALSTPASCAPHPGGKTGMEENRRLEHQKKQEKANRIVAEAIARARARGEQNI
PRVLNEDELPSVRPEEEGEKKRRKKSSGERLKEEKPKKNKTSGASKTKGKSKLNTITPVV
GKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEE
EVDVTGPIKPEPIIPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSG
QYTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFN
PDYVEVDRILDESHSVDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQS
RHPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGL
GKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQ
QYEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKL
LDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQK
LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTN
MPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDK
LLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDS
DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITR
NSYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDD
EGSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKK
ADLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHT
YGRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENI
KSFIWDLISPAENGKTKELQNHSVFDVSPFPGLSIPVPRGRKGKKVKSQSTFDIHKADWI
RKYNPDTLFQDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWF
PVVDQLEVPTAWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEH
RVLDNFSDLVEGIDFDKDCEDPEYKPLQGPPKDPEDEGDPLMMMDEEISVIDGEEAQVTQ
QPGHLFWPPGSALTARLRRLVTAYQRSYKREQLKMEAAERGDRRRRRCEAAFKLKEIARR
EKQQRWTRREQTDFYRVVSSFGVEYDPDNMQFHWGRFRTFARLDKKTDESLTKYFHGFVA
MCRQVCRLPPAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLAL
CQPPGLELPKWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGA
PAASLSRCSTPLLHQQCPSRTASPSPLRPDAPVEKSPEETAVQVPSLESLTLKLENEVVA
RSRLAPQDYEVRVASSDTAPLPRSIPPVKLEEEEDSDSELDLSKLSPSSSSSSSSSSSSS
STDESEDEKEEKLTADRSRPKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRAS
EWPKDRVLINRIDLVCQAVLSGKWPSIRRSQEITTGGILGPGNHLLDSPSLTPGEYGDSP
VPTPRSSSAASMVEEEASAVTTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHRLIA
NGVVGDGHPLFHKKKGSRKKLVELEVECMEEPNHLDLSLETRIPVINKVDGTLLVGEEAP
RRAELEMWLQGHPEFAVDPRFLAYMEERRKQKWQRCKKNNKTELNCLGMEPIQPANSRNG
KKGHYAETAFNRVLPGPIAPENSKKRVRRTRPDLSKMMALMQGGSTGSLSLHNTFQHSSG
NLQSVSSLGPSSATSAALPFMPFVMGGAAASPHVDSSTMLHHHHHHPHPHHHHHHHPGLR
TTGYPSSPATTTSGTALRLPTLQHEDDEEEEEEEDDLSQGYESSERDFSLIDDPMMPANS
DSSDDADD
NT seq
7767 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccccatcatggatctgtttgatgacccaaatttatttggcctggactccctg
actgatgacagctttaatcaggtcactcaagaccccattgaagaagcacttggactgcca
agctctctggactccttggatcagatgaaccaagatggcggaggtggtgatgtgggaaat
tcatcagcaagtgacctggttccccaaccagaggaaacagctcctcctgaacttcccaaa
gaatccacagctccagctccagaatccttaaccttgcatgattataccactcagcccacc
agccaggagcagccagcccaacctgtcttgcagacgtcaacgccaacatcaggacttttg
caggtctccaagagccaagagatcctgagccaagggaatcctttcatgggtgtctctgcc
acagctgtctctcccagtaatactggagggcaaccatctcagtcagcccctaagattgtt
atccttaaagccccaccaaactcctcagtcacgggtgcccatgtggcacaaattcaggcc
caaggtatcaccagtacggctcagcccttagtggctggcacagccaatggtggaaaagtc
acctttaccaaagtgctaactggtacaccccttcgaccaggtgtctccattgtctctggt
aatacagtgctggccaccaaggtccctgggagccaggctgctgttcagcgcattgtccag
ccaagccgaccagtaaagcagctagtcctccagccagttaagggttcagctcctgctgga
aaccctggggctgcagggcccccactgaagcctgcagtcacactgacttctacacctacc
cagggtgaatcgaaacgcatcaccttggtcctccagcagccacagactggaggtccccaa
ggacatcgacatgttgtgttagggagtctaccaggcaagatagtgttacagggcaaccag
ctggcagccttgactcaagccaagaatgcccaggggcagcctgccaaagtcgtaactatt
cagctgcaggtacagcagccacagcagaaaatccagattgtaccccagcctccttcttca
cagcctcaaccacagccgccacccacagcccagcctctgacactttcctctgtgcagcag
gctcagataatgggaccaggacaaagcccaggacagagactttcagtgccactcaaaatg
gtgctgcagccacaggctggctcttctcagggagcctcttctggcctctctgtggttaaa
gttctaagtgccagtgaagtggcagccctgtccacaccggcaagctgtgctcctcatcct
ggggggaagactggaatggaggagaaccgcaggctggagcaccagaaaaagcaagagaaa
gcaaatcgtattgtagcagaggccattgctagggcccgggctcggggcgagcagaacatt
cctcgagtcctgaatgaggacgagctgcccagcgtccggccagaggaggaaggggagaag
aaacgcaggaagaagagcagcggagaaagactgaaggaggaaaagccaaagaagaacaaa
acctctggtgcctccaaaacgaagggcaagagcaagctaaataccatcactccagtcgtg
ggcaagaagagaaaacgtaacacatcttctgacaactctgatgtggaagtcatgcctgca
cagtcaccccgggaggatgaagagagcagtatccagaagagacgttcaaaccgccaagtt
aaacgaaaaaaatatacagaggacttggatataaagataacagatgatgaagaagaggag
gaggtcgatgtaaccggtccaataaaacccgagcccatcatcccagaaccagtgcaggaa
cctgatggagagactctgccttccatgcagttctttgtggagaatcccagtgaagaagat
gctgctattgtggacaaagtgctttccatgcgagttgtgaagaaagagcttccttctgga
cagtacactgaggccgaggagttctttgtcaagtataagaactactcctacctgcactgt
gagtgggcaactatctcccagctggagaaggataagaggatccatcagaaactaaagcgg
ttcaaaacaaaaatggctcagatgagacacttcttccatgaggatgaagaacccttcaat
ccagactacgtagaggttgataggatattggacgagtctcacagtgttgacaaggataat
ggtgagcccgtcatctactacctggtgaagtggtgctctctgccctacgaggacagtaca
tgggagctaaaagaggatgttgatgagggcaagattcgagaatttaagcggatccagtca
aggcacccagaactcaaaagagtgaatcgtccacaggcaagtgcctggaagaaattggag
ctgtcacatgaatataaaaacagaaaccaactgagggaatatcagttagaaggagtcaat
tggctcctcttcaattggtataacaggcagaactgcatcctcgctgatgaaatgggatta
ggcaaaactattcagtcgattgccttcctacaggaggtgtataatgtaggcatccatggt
ccctttctggtcattgctccattgtccaccattactaactgggagcgagaattcaatacg
tggacggagatgaacactatcgtgtaccatggcagtctggccagccggcagatgattcag
cagtatgaaatgtactgtaaggattctcggggtcgcctcatcccaggtgcatataagttt
gatgccttgatcaccacttttgagatgattttgtcagactgtcctgagcttcgtgaaatt
gagtggcgctgtgttatcatcgatgaagcccaccgactgaagaaccgtaattgcaagcta
ctggatagtctgaagcatatggacctggagcataaagtgttactcacaggaacgccactg
cagaacactgtagaggaactattcagcctgctccatttcttggagccttcacagttccct
tcagaatcagagttccttaaggattttggagacctcaagacagaggagcaggttcaaaaa
ttacaggctattctcaagccaatgatgctgagaagactcaaagaggatgtggaaaaaaat
ttggctcccaaacaggaaactatcattgaagtagagcttaccaacatccagaagaagtac
taccgagccattttagagaagaatttctccttcctttccaaaggagcaggtcacaccaac
atgcctaacctgctgaacacgatgatggagttacgcaagtgctgtaaccacccgtacctc
atcaatggtgcagaagaaaaaatcctgatggaatttcgggaagcttgccatattatacct
caagatttccacttgcaggccatggtccggtcagctggcaagttggttcttattgacaag
ttacttccaaagctcaaagctgggggccataaggttctgatcttttcccagatggtgcgc
tgtctagacatcctggaggattatctaatccagaggaggtacttatatgaacggattgat
gggcgagttagaggcaatcttcgacaggctgctatcgaccgctttagcaagcctgactca
gaccgctttgtctttttgctgtgcacccgtgctggtggacttggtattaatcttacagct
gctgatacttgtattatctttgattcagactggaacccacagaatgacctgcaggcccag
gcacggtgtcatcgaattggacagagcaaagctgtgaaggtttaccgactcatcactcgt
aattcctacgagagagagatgtttgataaagctagcctcaagttgggattggataaggct
gtgctccagtccatgagtggtcgggatggcaacatcactggaatccaacagttctccaaa
aaagagattgaagatctcttaaggaaaggcgcatatgctgccataatggaggaagatgat
gagggttctaagttttgtgaggaggacatagaccagatcttactgaggcggacgacaacc
atcactattgagtctgaagggaaagggtctacctttgctaaggcaagctttgttgcttct
gaaaataggacagatatttccctggatgatccaaacttttggcaaaaatgggcgaaaaag
gcagacctagacatggatctgctgaatagcaagaataacttggtgattgacacacctcga
gtgcggaaacagactcgacacttcagcactctgaaagatgatgacctggttgagttttct
gatttggaaagtgaggatgatgagcggccgcgctcccgaagacatgaccggcatcacacc
tatgggcgcactgactgctttcgggtggaaaagcatctcctcgtatatggttggggacgt
tggcgagatattttgtctcatggacgctttaagcggcgcatgactgaaagagatgtggag
acaatatgccgtgccatccttgtgtactgtcttctgcactaccgcggggatgagaatatc
aagagcttcatttgggacttgattagccctgctgaaaatggcaagacaaaagaattgcag
aatcattcagtctttgatgtctcccctttcccaggtctgtctatccctgtgccacgtggg
cgtaaggggaaaaaagtaaagtcacaaagtacttttgacattcataaggcagactggatc
cggaaatataaccctgatactctgttccaagatgagagttataagaagcacttgaaacat
cagtgtaacaaggtactgttgagagtacggatgctgtactatctgaggcaagaagttatt
ggagaccaagcagagaaggtgttagggggtgccatcgcaagtgagattgacatatggttc
ccagtagtggatcagctggaagttccaacagcgtggtgggacagcgaagctgacaagtcc
ctgctcattggtgtttttaaacatggctatgaaaaatataacaccatgagggcagacccg
gccttgtgtttcctggaaaaggctggcaggccagatgacaaagctattgcagcggaacat
agagtgttagataatttctcagacctggtggaagggattgactttgataaggattgtgaa
gatcctgaatataagccactccagggtcccccaaaggacccagaggatgagggtgatccc
ttgatgatgatggatgaggagatctcagtcattgatggagaagaagcccaggtgactcaa
cagccagggcatttattctggcctccgggctctgccctgacagccaggctccgccgcctg
gtcacagcctaccagcgcagctacaagagagaacagctgaagatggaggccgcggagcgc
ggggatcgcagacgccggcgttgtgaagcagcctttaaactcaaagagattgcaaggcgg
gaaaagcagcaacggtggacgaggcgtgagcaaactgatttctaccgagtagtgtctagc
tttggtgtggagtacgaccctgacaacatgcagtttcactggggtcgcttccgcaccttt
gctcgactggacaagaaaacggatgaaagcctcaccaagtacttccatggctttgtggcc
atgtgtcgacaggtgtgccgccttcctccagctgctggcgatgaacccccagaccctaat
ctgttcattgagcccatcactgaagagagagcctcgcggaccctctaccgtattgaattg
cttcggcgcttacgggaacaagttttatgccacccccttttagaagatcggctggcattg
tgtcagcctccaggtcttgaattgcccaaatggtgggaacctgtccgtcatgatggggag
cttctacgaggggcagcccgccacggagtgagccaaacagactgcaacatcatgcaggac
ccagacttctctttcctggctgcccggatgaattatatgcagaaccatcaggcaggagca
ccagctgcatccctgtcgcgatgctctaccccactgctgcaccagcagtgtccctcacgc
actgcctcaccgtcacccctgcgcccagatgctcctgtggaaaagtcacctgaggagact
gctgtccaggtccccagtctggagagtctgactttaaagctagaaaatgaggtggtggct
aggagccgactcgccccacaagactatgaagtgcgtgtagcctcctcggatacagcccct
ctaccccggagtattccaccagtcaaactggaggaggaggaggattcagactctgagctg
gacttgagcaagttgtcaccgtcatcctcctcttcttcatcctcatccagctccagctcc
agcactgacgagagtgaggacgagaaggaagagaagttaactgctgaccggtcccgtccg
aaactctatgatgaagagagccttctgtccctcactatgtcccaagatggatttccaaat
gaagatggagaacagatgacccccgagctgctgctgctgcaggaaagacaaagagcctct
gaatggcccaaggatcgtgttctgataaaccgcattgacctcgtctgccaggctgtactc
tcaggaaaatggccttctatccgccggagtcaggaaataacaacaggaggaattttgggg
ccaggcaaccatttattagacagcccctctttgaccccaggagaatatggggactcgcct
gtccccaccccacgaagtagcagtgcggcttccatggtagaggaggaagcatctgcagtc
accacagcggcagcccagtttaccaaacttcgccgaggcatggatgagaaggagtttacg
gttcagatcaaagacgaagaagggctgaagctaacattccagaagcacagactgatagct
aatggtgtggtgggagacggacacccactgttccataagaagaaggggagcaggaagaaa
ctggtggagctggaggtggagtgcatggaagagcccaatcacctcgatctgagcttggag
acccggatccctgtcatcaataaggtggatggtactttgctggtgggtgaggaggcccct
cgccgggcggaactggagatgtggttacagggtcatccagagtttgctgttgatccccga
tttctagcgtatatggaggaacgtagaaaacagaagtggcagagatgtaaaaaaaacaat
aagacagaattgaactgtttgggaatggaaccaatacagcctgccaactctagaaatggg
aaaaagggacactatgcagaaactgcattcaatcgggttttgccagggcctattgcacca
gagaacagcaagaagcgtgtccgtaggacaagaccagacctttctaagatgatggccctg
atgcagggtggaagcactgggtccctgtctctgcataacacctttcagcacagcagtggt
aacctacagtctgtgtcgtctcttggtcccagcagcgccacttctgcagctctgccgttt
atgccgtttgtgatgggtggtgcagcagcgtcccctcatgtagactccagcaccatgctt
catcaccaccaccaccatccccacccccaccaccaccaccatcaccatccaggcttgaga
accactggctacccttcttccccagctaccaccacctctggtactgccttgcggttacca
acactgcaacatgaggacgatgaggaagaggaggaagaggaagacgatttatctcagggc
tatgagagctcagaaagggacttctcactcatcgatgatcctatgatgccagccaactca
gactccagtgatgatgctgatgactga
DBGET
integrated database retrieval system
