Arvicola amphibius (Eurasian water vole): 119800246
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Entry
119800246 CDS
T08327
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119800246 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
aamp01009
]
119800246 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aamp04515
]
119800246 (Pcdh9)
Protein phosphatases and associated proteins [BR:
aamp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119800246 (Pcdh9)
Cell adhesion molecules [BR:
aamp04515
]
Cadherins
Protocadherins
119800246 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
RCR
V_ATPase_I
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
119800246
NCBI-ProteinID:
XP_038166307
LinkDB
All DBs
Position
13:24843557..25685991
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADVGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPVFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDED
AGENKAVTLSILNDNENFLLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPALTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHNKSD
TIPVTHQQCPSSTDFHIRQNEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGS
NEGHFNNGSHMADIPLANLKSYKQVGGTTESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttatctgttggctgctctgattgcctgtttaaggctggattcg
gctatagctcaagaacttatttacactattagagaggaattgcctgaaaatgtgcccata
ggaaatataccaaaggacttgaacatttctcacatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtttctaaagctggggatgcccctctggtgaaagtatccagc
agcactggggagattttcacaacctccaatagaatagacagagagaaactctgcgccgga
gcttcttatgcggaggagaatgagtgtttctttgaacttgaggtggtgatcctccccaat
gactttttcaggctgatcaaaatcaagatcattgtcaaggataccaatgataatgccccc
atgtttccgtctcctgtcatcaatatttccattccagaaaacactttgatcaacagccgc
tttccaatcccatcagccacagaccctgacacaggcttcaatggggtgcagcattatgaa
ttgctaaatgggcagagtgtttttggactggatatcgtggaaactccagagggagagaag
tggccgcaattgattgttcagcagaacttggacagagaacaaaaagatacctatgtgatg
aaaatcaaagtggaggatggaggtactccacagaaatccagtacagccatactgcaggtc
actgtaagtgatgtgaatgacaacaggccagtgtttaaagagggtcaagtagaggtgcat
attccagagaatgctcctgtggggacctctgtgattcagctccatgcaactgatgcagat
gtaggcagcaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataacacaactgggctgattacagttcagaggtctttagatagg
gaagagacagccattcacaaagtgacggtgttggctagtgatggcagttccactcctgcc
agagccacagtgaccatcaatgtcaccgatgtaaacgataaccctccgaacatagacctc
aggtacattataagtcccatcaatggcacagtgtatctgtctgagaaagaccccgtcaat
acaaagattgccctgattacagtttcagacaaggacacagacgtgaatggcaaagtgatc
tgtttcattgaaagagaggtcccgtttcatctgaaggcagtgtatgacaaccagtatctg
ctagagacatcttctctgctggactatgagggcaccaaagaattcagctttaaaatcgtt
gcctctgattctgggaagcccagtttgaatcagactgccctggtaagggttaagctggag
gatgaaaatgacaacccaccagttttcaaccagcctgtaattgagctgtcagtctctgaa
aacaaccgacgtgggttatacttaacaactattagtgctacagacgaagacagtgggaaa
aatgcagacattgtttatcagcttgggccgaatgcctccttctttgatctggacagaaag
acaggagttttgacagcctccagagtatttaacagggaggaacaagagcgattcattttt
acagtcactgccagggacaatgggacccctcccctccaaagccaagcagcagtgatagtt
actgttctggatgagaatgacaatagccccaagtttactcataatcattttcagtttttt
gtgtcggagaatctgccaaagtatagtactgtgggagtaatcacagtgacagatgaagac
gctggagagaataaagctgtgactctttccattctaaatgacaatgaaaatttcctgttg
gatccctattcaggagtcataaagtcaaatgtctcctttgaccgagagcagcagagttcc
tacacatttgatgtcaaagccactgatggaggacagccacctcggtcctctacagcaaaa
gtaacgatcaatgtcatggatgtcaatgacaacagcccagttgtcatttctccaccatcc
aacacctcatttaagttggtgcccctctctgccattcctggttctgtggttgccgaagtt
tttgccgtggatattgatactggcatgaatgcagaacttaagtacaccatagtgagtggg
aacaacaaaggattgtttcggattgatccagtaacaggcaatatcactctagaagagaag
ccagcactgactgatgtgggcctgcaccgcctggtggtcaacataagtgacctggggtac
cctaaggctttgcacactcttgtgctggtatttctttatgtaaatgatactgctggaaat
gcctcgtatatctatgacttgatccgcaggactatggagaccccactggacaggaacata
ggagatagtagccaaccctaccaaaatgaggactatctcaccatcatgattgccattgtc
gcgggggccatggtggtcatagttgtgatctttgtcactgttctggtacgctgtcgccat
gcatcgaggttcaaagcagctcagaggagcaagcaaggtgctgagtggatgtccccaaac
caagagaataaacaaaacaagaaaaagaaacggaagaaaagaaagtcccccaaaagttct
cttttgaactttgttaccattgaagagtccaaacccgatgatgcagttcatgaacctatc
aatgggaccatcagcctgcctgctgagctggaggaacaaagtataggaagatttgactgg
ggccccgcacctccgaccactttcaagcctaacagtcctgacctggccaagcactacaaa
tctgcctctccacagcctgcttttcatctcaaaccagacactccagtatccgtgaaaaag
caccatgtcattcaggagctccctttggacaacacctttgttgggggctgtgacaccctt
tccaaacgctcctccactagttcagatcacttcagtgcctcagagtgcagctcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacaacaaaagtgac
actatccctgtcacacatcagcaatgcccaagctctactgatttccacattcgacagaat
gaagaaagtcattccgagtctcagcgccgtgttacctttcacctcccggatggctcccag
gaaagctgcagtgacagtggtctgggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaagcctctccggac
aagaggaccgaagcagatggcaactcggaccccaactctgatggacctctgggtccccga
ggattagctgaagctacggagatgtgcactcaagagtgtctggttttgggtcactctgat
aattgctggatgcctcctggcttgggtccatatcaacacccgaaatctcctctgtcgacc
tttgcaccccagaaagaatgggtcaagaaagacaagcttgtgaatgggcacaccctgacc
agagcgtggaaagaagacaccaacaggaaccagttcaatgaccgtaagcagtatggctcc
aatgaaggccatttcaacaatggcagccacatggcagacattcctctggcaaatctgaag
tcctataagcaagtgggtggcacaactgagagtcctaaggagcaccaactttaa
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integrated database retrieval system
