Arvicola amphibius (Eurasian water vole): 119800311
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Entry
119800311 CDS
T08327
Symbol
Ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
aamp03037
]
119800311 (Ift88)
Cilium and associated proteins [BR:
aamp03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
119800311 (Ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_7
TPR_8
TPR_19
TPR_16
TPR_14
TPR_6
TPR_11
ANAPC3
TPR_10
TPR_CcmH_CycH
TPR_17
ARM_TT21_4th
TPR_9
ARM_TT21_5th
TPR-S
ARM_TT21_N
TPR_21
TPR_15
RPN7
DUF6584
ARM_TT21_C
HEAT_Nup120
HAT_PRP39_C
Coatomer_E
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
119800311
NCBI-ProteinID:
XP_038166363
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All DBs
Position
13:complement(56481334..56589584)
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AA seq
825 aa
AA seq
DB search
MMENVHLAPETDEDDLYSGFNDYNPAYDTEELENDTGFQQAVRTSHGRRPPVTAKIPSTA
VSRPIATGYGSKTSLASSMGRPMTGTIQDGVARPMTAVRAAGFSKSALRGSAFDPLGQSR
GPAPPLEAKNEDSPEEKIRQLEKKVNELVEESCIANSCGDLKLALEKAKDAGRKERVLVR
QREQVTTPENINLDLTYSVLFNLASQYSANEMYAEALNTYQVIVKNKMFSNAGRLKVNMG
NIYLKQRNYSKAIKFYRMALDQIPSVHKEMRIKIMQNIGITFIKTGQYSDAINSFEHIMS
MAPNLKAGFNLILSCFAIGDREKMKKAFQKLIAVPLEIDEDDKYISPSDDPHTNLLIEAI
KNDHLRQMERERKAMAEKYIMTAAKLIAPVIEASFAVGYNWCVEVVKASQYVELANDLEI
NKAITYLRQKDFNQAVDTLKMFEKKDSRVKSAAATNLSFLYYLENEFAQASSYADLAVNS
DRYNPSALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTEALYNIGLAYKKLNRLDEALD
SFLKLHAILRNSAQVLCQIANVYELMEDPNQAIEWLMQLISVVPTDSQALSKLGELYDSE
GDKSQAFQYYYESYRYFPSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLM
VASCFRRSGNYQKALDTYKEIHRKFPENVECLRFLVRLCTDIGLKEVQEYATKLKRLEKM
KEMREQRIKSGRDSGGGSRSKREGSAGSDSGQNNSANSKSERLSAKLRALPGTDEPYESS
SNKEIDASYVDPLGPQIERPKTAAKKRIDEDDFADEELGDDLLPE
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgatggaaaatgtgcacctggcgccagaaacagatgaggacgatctttattctggtttt
aatgactacaatccagcctatgatactgaggagttggagaatgacactggttttcagcaa
gcagtgagaaccagtcatggcagaagacctccagtaactgctaaaataccaagcacagca
gtcagcagacccatagccactggatatgggtctaagacatccctggcatcatcgatggga
agaccaatgacagggactattcaggatggagttgctcgacccatgacggcagtgagagca
gctggcttttccaagtcagctttgagaggttcagcatttgatcccctcggccagtccagg
ggtcctgctcctcctttggaagccaaaaacgaagatagcccagaagagaagatcagacag
ctggagaagaaagtgaacgagctggtcgaggagagctgtatcgccaatagctgtggggac
ttaaagctggccttagaaaaggcaaaagatgcaggaagaaaagaaagagtcctggtgagg
caacgggagcaagttacaactccagaaaatatcaacttggatttaacgtactccgttctc
ttcaacttggccagtcagtattcagccaatgaaatgtatgcagaagcactgaacacatac
caagtgatagtgaaaaataagatgtttagcaatgcagggagactgaaagtgaatatggga
aatatttatttaaagcagaggaattactccaaagccattaaattctaccgaatggcctta
gatcagatcccgagtgtccataaggaaatgaggattaaaataatgcagaacattgggatt
acatttataaaaactggtcaatattcagatgccattaattcattcgagcacatcatgagt
atggccccgaatctgaaggcaggcttcaacctaattctcagttgttttgccattggagac
cgagaaaaaatgaagaaggcattccagaagttaattgctgttcccttagaaattgatgaa
gatgataagtacatctccccaagtgatgatccccatactaatttactgattgaagctata
aaaaatgaccatcttaggcaaatggaacgtgaaaggaaagccatggcagaaaaatacatc
atgacagctgcaaaactcatcgctcctgtaatcgaagcatcttttgccgtgggttataac
tggtgtgtggaagtggtgaaagcgtctcagtacgtagagctggccaacgacctggagatt
aacaaagcgattacatacttaagacaaaaggactttaaccaagctgtagacaccttgaag
atgtttgaaaagaaggacagtagagtgaaaagcgcagctgccaccaacctctcgttcctg
tattacctggaaaatgaatttgcccaagccagcagctatgcagacttagctgtgaactca
gatagatataacccatccgctctcactaataaagggaacacggtttttgccaacggtgat
tatgagaaggcagctgaattctataaggaggccctgagaaacgattcttcttgtactgaa
gcactttataacattggcctcgcctataagaagctaaaccgtctagacgaagccttggac
tcgttcctgaaactgcatgcgatccttcggaacagcgctcaagttctttgccagatagca
aatgtatacgagctaatggaagatcccaaccaagcgattgagtggctgatgcagctgatc
agcgttgttccgactgattcccaagctctgtctaaactgggcgagctgtacgacagcgag
ggggacaagtcccaggccttccagtactactacgagtcatacaggtatttcccttctaat
atcgaggtcattgagtggctcggagcctattacattgatacccagttctgtgaaaaagct
attcagtactttgaaagagcgtctcttatacaacccacacaagtaaaatggcagctgatg
gtagctagctgtttcagaagaagtggtaactaccaaaaggcattagatacttacaaagag
attcacaggaaatttccagagaatgttgaatgcttacgtttcttagttcgtctctgcaca
gatatcggattaaaagaagttcaagaatatgccacaaaactcaagcggttggaaaaaatg
aaagaaatgagggaacagcgcataaaatctggcagagacagtggtggaggctcccgtagc
aaacgagaggggagcgctggcagtgacagtggccagaacaatagtgccaatagtaaaagt
gaacgactgagtgccaagctcagagctttgcctgggacagatgaaccctatgaaagtagc
agtaacaaagaaatagatgcctcctatgtggatccactgggccctcaaatagaaagacca
aaaaccgcagccaaaaagagaatcgacgaggatgattttgctgatgaagagttaggagat
gacttgcttccagaatga
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