Arvicola amphibius (Eurasian water vole): 119800412
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Entry
119800412 CDS
T08327
Symbol
Pcdh8
Name
(RefSeq) protocadherin-8 isoform X1
KO
K16499
protocadherin delta 2
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
aamp04515
]
119800412 (Pcdh8)
Cell adhesion molecules [BR:
aamp04515
]
Cadherins
Protocadherins
119800412 (Pcdh8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
119800412
NCBI-ProteinID:
XP_038166503
LinkDB
All DBs
Position
13:35383727..35387469
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AA seq
1069 aa
AA seq
DB search
MSPMKHWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGTVIGTLAEDLHMKVSGD
TSFRLMKQFNSSLLRVREGDGQLTVGDAGLDRERLCGQAPQCVLAFDVVSFSQEQFRLVH
VEVEVRDVNDHAPRFPRAQIPVEVSESAPVGTRIPLEVPVDEDVGANGLQSVRLAEPHSP
FRVELQTRADGAQCADLVLLQELDRESQASYSLELVAQDGGRPPRSATAALSVRVLDAND
HSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGDVVFTFGARTPPEARHLFRLD
PRSGRLTLAGQVDYERQDTYELDVRAQDRGPGPRTATCKVIVRIRDVNDNAPDISITPLA
APGAPGASPFAAAAAAAALGGADTASSVGPGTQEAGATSLVPEGAARESLVALVSTSDRD
SGANGQVRCALYGHEHFRLQPAYAGSYLVVTAASLDRERIAEYNLTLVAEDRGAPPLRTV
RPYTVRVGDENDNAPLFTKPVYEVSVRENNPPGAYLATVAARDPDLGRNGQVTYRLVEAE
VGRSGEAVSTYVSVDPATGAIYALRSFDYETLRQLDVRIQASDGGSPQLSSNALVQVRVL
DQNDHSPILVHPAPANGSLEVAVPGLTAKDTAVARIQARDADEGANGELAFDLLQQEPRE
AFSIGRRTGEIVLTGDLSQETPGRVFKALLVISDGGRPPLTTTATVSFVVTAGGGPAAPA
SAGNPEHSRPPGSRLAPSGPSLQWDTPLIVIIVLAGSCTLLLAAIIAIATTCNRRKKEVR
KGGALREERPGAAGGGASAPGSPEETARGAGPRPNMFDVLTFPGSGKAPFGSPAADAPPP
AVAAAEVPGSEGGSATGESACHFEGQQRLRGAHAEPYGASPGFGKEPAPPVAVWKGHSFN
TISGREAEKFSGKDSGKGDSDFNDSDSDISGDALKKDLINHMQSGLWACTAECKILGHSD
RCWSPSCAGPNAHPPPHPPAQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEKVL
HRDYDRTVTLLSPPRPGRLPDLQEIGVPLYESPPGGRYVSPKKGANENV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctatgaagcactggggcagcccttgcctttttcccttgcagctctttagtctc
tgctgggtgctctcagtggcccagagcaagacagtccgatacagcaccttcgaagaggat
gcccctggcacggtcatcgggacccttgcagaggacctgcacatgaaagtgtctggagac
acaagcttccgcctgatgaagcagttcaacagctctctgctccgggtacgtgagggcgac
gggcaactgaccgtcggggacgcaggcctggaccgtgagcgtctgtgtggccaggctcca
cagtgtgtgctggccttcgatgtggtcagcttctcccaggagcagttccgactggtgcac
gtggaggtggaggtgagggatgtcaacgaccatgcgccccgctttccccgagcccagatc
ccggtggaggtctccgagagtgctcccgtaggcacgcgcatccccctggaggtgcctgtg
gacgaggacgtgggtgccaacgggctgcagagtgttcgtctggccgaacctcatagcccc
ttccgcgtggagctacagacgcgcgcggatggtgcccagtgtgcagacctggtgctgctc
caggagctggaccgcgagagtcaggcttcctatagcctggagctggtggctcaggacgga
gggcgaccgccacgttccgccacagcagcactcagtgtgcgcgtgctagatgccaatgac
cacagcccggccttcccccagggtgccgtggccgaggtagaattggccgaggacgcacct
gtgggatcgctgctgctggacctggacgctgcggacccagacgagggtcccaatggcgac
gtagtattcaccttcggcgcccgcacccctcccgaagcccgccatctcttccggctcgac
ccgcgctctggccgcctcaccttggccgggcaggtagactacgagcgccaggacacatat
gagctggacgtgcgggctcaagaccgaggcccagggccccggacagccacctgcaaggtc
atcgtgcgtatccgagacgtcaacgacaacgctcccgatatttctatcacccctctggcc
gccccgggggctccaggcgcctcgcccttcgccgccgcagccgccgccgccgcactcgga
ggagcggacacggcctcgtcggtggggcccgggacacaggaagccggcgccacctcgctg
gtgccagagggggcggcgcgcgagagcctggtggcgctggtcagcacctcggacagggac
tcgggcgccaacgggcaggtgcgctgcgccctctacgggcacgagcacttccggctgcag
ccggcctacgcgggcagctacctggtggtcaccgcggcgtctttggaccgggagcgcatc
gccgagtacaacctaacgctggtggccgaggaccgtggcgcgccccctctgcgcaccgtg
agaccctacaccgtgcgcgtgggtgacgagaacgacaacgcgccgctcttcaccaagcca
gtctacgaggtgtcagtccgcgaaaacaaccctccaggcgcctatctggccacagtggcc
gcccgcgacccggacctgggccgcaacggtcaggtcacctacaggctggtagaggccgaa
gtgggccgctccggggaagccgtgtccacttacgtctcggtagacccggcgaccggggcc
atctacgctctgcggagcttcgactatgagacgctgcgccagctcgacgtgcgcatccag
gccagcgatggcggatccccccagctttccagcaacgctctggtgcaagtgcgggtgctg
gatcagaatgaccactctccgatcctcgtgcacccggcgccggccaatggctccctagaa
gtagcagtccctggactgactgcaaaggacacagctgtggcgcgcatccaggcccgggat
gctgacgaaggcgccaacggagaactggcctttgatctcctgcagcaggagccacgcgag
gccttctccataggccgccgcacgggggagatcgtgctcaccggggacctctcgcaggag
actccaggccgcgtgttcaaggccctgctggtcatatccgacggcggccgccctcctctc
accaccacagcaaccgtcagtttcgtggtcacagcaggcggcgggccagcagcgcctgcc
agtgccgggaacccggagcactcccggccacctggctctcgcctcgcgccgtcggggcct
tcgctgcagtgggacacgccgctgatcgtcatcatcgtgttagccgggagctgcacgctg
ctgcttgccgccatcatcgccatcgccaccacctgcaaccgccgcaagaaggaggtgcgc
aaagggggggccctccgggaagagcggcccggggcggcgggcggcggagcctcggcccct
ggctccccggaggagaccgcccggggagctgggcccaggcccaacatgttcgacgtgctc
accttccctggcagcggcaaagcgccctttggcagccccgcggccgacgcgcccccgccc
gcggtcgccgcggccgaagtgccgggctcggagggcggcagcgccactggggaaagcgcc
tgtcacttcgaggggcagcaacggctccgaggcgcgcacgccgagccctacggcgcctct
ccgggcttcgggaaggagcctgcgccccctgtggcggtttggaagggccactcattcaac
accatctctggccgagaagctgaaaagttcagcggcaaagacagcggaaaaggagacagt
gatttcaatgacagtgactccgacatcagcggggacgctttgaaaaaggacctcatcaat
cacatgcagagtggactgtgggcgtgcactgctgaatgcaagatcctgggccattctgat
cgctgctggagcccatcctgtgccggacccaatgcacacccccctcctcacccaccagcc
cagatgtcaaccttctgtaagagcacatccctgcctcgggatcctctgcgcagggacaat
tactaccaagcccagctgcccaagacagtggggttgcagagcgtctatgagaaagtgttg
catagagactatgacaggacagtcactttgctctcccctccccgtccagggaggctccca
gacctgcaggagattggagtacccctctatgagtcccctcctggtggcagatatgtgtcc
ccaaagaagggggccaatgaaaatgtgtaa
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