Arvicola amphibius (Eurasian water vole): 119801098
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Entry
119801098 CDS
T08327
Symbol
Synpo2
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119801098 (Synpo2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
aamp04990
]
119801098 (Synpo2)
Domain-containing proteins not elsewhere classified [BR:
aamp04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
119801098 (Synpo2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
PDZ_2
PCM1_C
Motif
Other DBs
NCBI-GeneID:
119801098
NCBI-ProteinID:
XP_038167489
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All DBs
Position
14:complement(32018118..32163693)
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AA seq
1262 aa
AA seq
DB search
MGTGDFICISMTGGAPWGFRLQGGKEQKQPLLVAKIRSQSKASDSGLCEGDEVVSINGNP
CADLTYPEVIKLMESITDSLHLLIKRPCSGTSETLDSETENINHQHLTHEGPMESTTLQI
LPATNTQCKDFFLASVPSKVSLTEDQGNDWGYAECTTGEKIPQMLGSQEEHLVEEVILRE
KAEEGQAGRVVELQLSLSKERHQYASGPIVALQGNENSKSPDPDWSSQHERTVHINSVAA
PEEEADTSLLPSTTSQTSSGQPLRVIQGREAGGAGLPQVEVILDCSDRQKAEECRLQAGK
GCVASGVEGGRSEAPPSLVSFAVSPEGTEQGEDQRPGKDHSRPHKHRARHARLRRSESLS
EKQVKEAKSKCKSIALLLTDAPNPNSKGVLMFKKRRRRARKYTLISYGTGELEREEEEEE
DQEEGDKDEISEVAFLGTSESEVDEELLSDIDDDAQVVNFDWDSGLVDIEKKLSRGDKME
MLPDTTGKGALMFAKRRERMEQFTAQNEEEKAGALPGREPDGLQADGLRTVTSYQRKEEE
SVRMQSSVSESSIQMGCSLGNMPQQNGFSGVSETAGAQRMIPMNRTAKPFLGTMNQTAAP
FSPTRSVTSPMSDFPAPPPYSAVSPPPEAFSRGVASPITGPAQPPPWPQPAPWSQPAFYD
SSEQIASRDERIAVPAKRTGILQEARRRGTTKPMFTFKETKVSPNPELLSLLQNAEGKRG
AGAGGDSGPEEDYLSLGAEACNFMQSSAKQKTPPPVAPKPAVKSTSSQPVTPVSPVWSPG
VAPSQRPAFSTSNLPNPPQVTAVSSIKIAQPSCPPARPASSLNLAGPFKGPQAAVVSHNY
TPKLSAPTSQVNAHAGAGGPSNELPGMSGKGAQLFAKRQSRMEKYVVDSDTVQAHAVRAQ
SPTPSLPASWKYSSNVRAPPPMAYNPIHSPSYPLAAIKSQPPTAQASKTSKKKGKKPLNT
LDVMKHQPYQLNASLFTFQPPDAKDSLPQKSTVKVTSGPAVRHALPPRQVNVGSPTNAQA
SSVYSVPAYPAQPSFFAEPTSPVSAPPVPVSVPTSPKQESASSSYFVAPRPKFSAKKSGV
TVQASGRSLSLPGKPAPPNMSAPPWLYQPAHGFPSRPTLGLEKANKRPTPWEAAARSPLG
LVDDAFGPRSIQESIVANVVSAARRKACSGSQEDWKERLSFVSQTQKTNMSFPERQEYNA
PSPVSSLMSTHSVYSSQLPYVSPRQESRYDPKIMPMETRSEYGLPLGGYNYNRHPRGWRH
QP
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggagattttatctgcatttccatgactggaggggcgccctgggggtttagg
ctgcaaggaggcaaggagcagaagcagcccctgctagtcgcgaagattcgaagtcagagc
aaagcatcagactctggcctgtgtgagggggatgaagtggtgtccatcaatggcaaccct
tgtgcagacctcacctaccctgaagtcatcaagcttatggagagcataacagactctctc
cacttgcttatcaaaagaccatgcagtggtacaagtgagactttggattctgaaacagaa
aacataaaccatcagcatcttacacatgaggggcccatggaaagtaccaccttgcagatt
cttccagccacaaacacccagtgcaaagacttcttcctcgcttcagtcccaagtaaagtt
tccctaaccgaggaccaaggaaatgattggggttacgcggaatgtacaacgggagaaaaa
attccccagatgcttggctcccaagaagaacacttggtagaggaggtcatcttaagggaa
aaggcagaagaaggccaggcgggccgtgtagttgagctccaactgtctctctcaaaggaa
agacatcagtatgctagtggccccatagtggctctccagggaaacgaaaactccaagtct
cctgacccagactggagttcacaacacgagaggaccgtccacatcaattcggtcgctgct
cctgaggaggaagcagacacttctctcctgcccagcacaacaagccagacctccagcggc
cagccgctgagagtgatccaagggagagaagcgggaggcgcagggctgccccaggtggaa
gtgattctggattgctctgacaggcagaaggcggaagagtgcaggctgcaggcaggaaag
gggtgtgtggcttctggggtggaaggagggcggtcagaagcacctccttctctggtctcc
tttgccgtctcaccagaaggcaccgaacagggggaagatcaacgcccgggaaaggatcat
agcagaccacacaaacacagggcacgacatgctcggctcaggaggagcgaaagtctgtct
gaaaagcaagtgaaagaagctaagtctaaatgcaaaagcatcgctctccttctaaccgat
gctcccaaccccaactccaagggggtgttgatgtttaagaagcggaggcggagggcccgg
aagtacaccctaatcagttacggtactggcgagcttgaaagagaggaggaggaggaggag
gaccaggaggaaggtgacaaggacgagattagtgaagtcgcatttcttggaacgagcgag
tcagaagtggatgaagagttgctgtcggacattgacgacgacgcacaagttgtgaacttt
gactgggattctggactggtagacattgaaaagaagctgagccgaggggacaagatggag
atgctgccagacaccacaggcaagggggcgctcatgtttgctaagaggagagagaggatg
gaacagttcaccgcccaaaacgaagaggagaaagcgggtgcgctgccaggcagagaacca
gacgggctgcaggcggacggtctgagaaccgtgacttcttatcaaaggaaggaagaggaa
tccgtgagaatgcagagctctgtgagtgaaagctccatccagatgggctgtagtcttggc
aacatgccacaacagaatggcttcagtggcgtttctgagacagcaggggcccagaggatg
atccctatgaacagaaccgccaagcccttcctgggaactatgaaccagacagcagccccc
ttctccccaacccggagtgtgacaagccccatgtccgactttcctgccccaccaccttac
tctgccgtctcacctccacccgaagccttctccagaggggtagcaagtccaatcactggc
ccagcacagccgccgccatggccccagcctgctccatggtcacaaccagcgttctacgat
tcttctgagcaaatagcttcccgggacgagaggatcgcagtgcctgcgaaaagaacaggc
atactgcaggaagccagaaggcgaggcaccacaaaacccatgtttacgtttaaagaaacc
aaagtgagccccaaccctgagctcctgtcacttcttcaaaatgcagaaggtaagcgaggc
gccggagctggaggggattcggggccggaagaagactatctcagcttaggcgcagaggct
tgtaacttcatgcaaagttctgctaagcagaagaccccacctcccgtcgccccaaagcct
gcagtcaagtccacctcctcacaaccggtaaccccagtttctccagtctggtctcccgga
gtggctccatcccagcgtcctgccttctccacatcaaacctaccgaacccaccacaggtc
acagctgtgtcctctatcaaaatagcccagccctcctgccctcctgcccggcctgcgagc
tcactgaacctggccggtcccttcaaagggccccaagcagcagtcgtcagtcataactac
acgcccaagctatcggcacccacatcgcaagtaaatgctcacgctggtgccgggggacca
tccaatgagcttcctggaatgagcgggaaaggagcccagctgtttgctaaaaggcagtcg
aggatggagaagtacgtggtagattccgacacagtgcaggcccacgcagttcgggcccag
tctcctactccgtccctgccagccagctggaagtactcctcgaatgttcgagcaccccct
cctatggcctacaatccgatccattccccctcatacccactggctgctatcaagtctcag
ccacctactgcccaggcctccaaaacgagcaagaaaaagggcaagaaaccgcttaacact
ttggatgtcatgaagcatcaaccgtatcagctcaacgcgtctctgtttaccttccaacct
cctgacgcaaaggatagcctccctcaaaagtcaacggtcaaggtcacttcaggcccggct
gtgaggcacgcccttcctccccgacaggtgaatgttggctctcccaccaatgcgcaggct
tcgtctgtgtactcggtaccggcctatcccgctcagccctccttcttcgcagagcccacc
tcgcccgtcagtgcacccccagttcctgtgagtgttcccacctcgccgaagcaagaatcc
gcttcctcatcgtattttgtggcaccaaggccgaagttctcagccaagaaaagcggtgtc
acagtccaggcgagtggacgctccctttctcttcctggaaaaccagccccgcccaacatg
tctgcacctccgtggctgtaccagccggctcacggtttccccagtaggccgaccctcggg
ctggagaaagctaacaagagaccaacaccttgggaagcagcggctaggtctccccttggt
ctagtggatgacgccttcggacccagaagcatccaggaatccattgtggcgaatgtagtc
tccgcagctcggaggaaggcgtgttcagggtcccaagaggactggaaagagagactgtcc
tttgtctcccaaactcagaagaccaacatgagtttccctgaaaggcaagagtataatgct
ccatccccagtcagcagcctcatgtccacccactccgtgtacagttcccagttgccgtat
gtgagccctaggcaggagtccagatacgacccgaaaataatgcccatggagaccaggtct
gaatacggtcttccattaggtggctacaattataaccggcacccacgggggtggagacac
caaccatga
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