Arvicola amphibius (Eurasian water vole): 119801657
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Entry
119801657 CDS
T08327
Symbol
Utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119801657 (Utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aamp03009
]
119801657 (Utp4)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
119801657 (Utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_WDR75_1st
PEP5_VPS11_N
Beta-prop_TEP1_2nd
PROPPIN
Beta-prop_WDR19_1st
Beta-prop_RSE1_2nd
NBCH_WD40
Beta-prop_SPT8
Beta-prop_CAF1B_HIR1
Beta-prop_WDR35_TULP_N
Beta-prop_IFT122_1st
Frtz
PQQ_2
Beta-prop_TEP1_C
CPSF_A
DUF1513
Motif
Other DBs
NCBI-GeneID:
119801657
NCBI-ProteinID:
XP_038168178
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Position
15:complement(31878767..31909059)
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AA seq
686 aa
AA seq
DB search
MGEFKVHRVRFFNYVPSGIRCVAYNNQSNRLAVSRTDGTVEIYNLSANYFQEKFFPGHES
RATEALCWAEGQRLFSAGLNGEILEYDLQALNIKYALDAFGGPIWSMTASPSGSQLLVGC
EDGSVKLFEVTPDKIQFARNFDRQKSRILSLSWHPAGTHIAAGSIDYVSVFDVKSGSIIR
KMVLDRQHLGVTKSRCIVWGVAFLSDGTVISVDSVGKVQLWDSATGTLVKSHVIANADVQ
SIAVADQEDSFVVGTAEGTVFHFQLVPVTPSSSEKQWVRTKPFQHHTHDVRTVAHSPTAL
ISGGTDTHLVIRPLMEKVEVKNYDAALRKITFPHRRLISCSKRRQLLLFQFAHHLELWRL
GSTVATGKNGDTLPLSKNADHLLHLKTKGPENISCSCVSPCGSWIAYSTASRFFLYRVKY
ERDNISLQRVSKMPAFLRSALHILFSEDSTKLFVATNQGSLHIIQLLEGNFKHLHTFQPQ
SGTVDSMCLLAVSPDGNWLAASGTSAGVHVYDLNHLKLHCTVPAYNFPVTALAIAPNTNN
LVIAHSDQQVFEFSIPDKQYTEWSRAIQKQGFHHLWLQRDTPITHISFHPKRPMHILLHD
TYMFCIIDKSLPLPNDKTVLYNSLPPKNESDVFLRRTAHAFKISKIYKPLLFMDLLDERT
LVAVERPLDDIIAQLPPPIKKKKFGT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaatttaaggtccatcgagtacgtttctttaattatgttccatcaggaatccgc
tgcgtggcttacaataaccagtccaacagattggctgtctcacgaacagatggcacggtg
gaaatttataacttgtcagcaaactactttcaggagaaatttttcccaggtcatgagtct
cgggctacagaagccctatgttgggcagaaggacagcggctctttagtgctggactcaac
ggagaaattctcgagtatgacctacaggcactaaacataaagtatgctctggatgccttt
ggaggacctatttggagtatgaccgccagccccagtggctctcagcttttggttggctgt
gaagatggctctgtgaaactatttgaagtcactccagacaaaatccagtttgcaagaaat
tttgatcggcagaaaagtcggatcctaagtctcagttggcatcctgctggtacccacatt
gcagctggctccatagactacgttagcgtgtttgatgtcaaatcagggagcattatccgt
aagatggttttagataggcaacacctgggagtgacgaagtcaaggtgtattgtgtggggt
gttgccttcttgtccgacggaactgtcataagtgtggactctgttggaaaggtgcagtta
tgggactcagctacggggacacttgttaagagccatgtcatcgcaaatgctgatgtgcag
tctattgctgtcgctgatcaagaagacagttttgtggtgggcacagccgagggcacagta
ttccattttcagctggtccccgtgactcccagcagcagtgagaagcagtgggtacggaca
aagccgttccagcatcacactcacgatgtgcgcactgtggcccacagccccacagctctg
atatcaggaggcacagacacccacctagttattcgtcctctcatggagaaagtggaggtc
aagaattatgatgctgccctccggaagatcacttttccccatcgtcgtctcatctcctgt
tcaaaaagaaggcagcttctcctcttccagtttgctcatcacttggagctttggagacta
ggatctacagttgcaaccggcaagaacggagatactcttccactctctaaaaacgcagac
catctgctgcacctcaagacaaagggccctgagaacattagctgcagttgtgtttccccg
tgtggaagttggatagcctattctacagcctctcggttttttctctatcgcgtgaaatat
gaacgtgacaacataagcctccaaagagtttccaaaatgccagcgttccttcgctctgcc
ctccatattttgttttctgaagattcgacaaagctctttgtggcaacaaatcaagggtct
ctgcatatcattcagctgctggaaggaaacttcaagcatttgcatactttccagcctcaa
tcagggacagtggattctatgtgtcttttggcagtcagtccagatgggaattggctagct
gcatcaggtaccagtgctggagtccacgtatacgatctgaatcatctaaagctccactgc
acagtccctgcttacaactttccagtgactgctttggccatcgcccccaacaccaacaac
cttgtcattgctcattctgaccaacaggtatttgagttcagtatcccagacaagcagtat
acagagtggagccgagctatccagaagcaaggatttcaccacctatggctccaaagggat
actcccatcacacacatcagcttccatcccaagagaccgatgcacatcctccttcatgat
acctacatgttctgcatcattgacaagtccttgccacttccaaatgacaaaactgtgctc
tataattcacttcctccaaaaaatgaatcagatgtcttcctgaggcgcacagcccatgca
tttaaaatttctaagatatataagcccttactcttcatggatctcttggatgaaaggacc
cttgtggcagtagaacgacccctggacgacatcattgctcagctcccaccacccatcaaa
aagaagaaatttggaacttaa
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