Arvicola amphibius (Eurasian water vole): 119801664
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Entry
119801664 CDS
T08327
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119801664 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119801664 (Cnot1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119801664 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119801664 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
119801664
NCBI-ProteinID:
XP_038168188
LinkDB
All DBs
Position
15:4053412..4131875
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMSKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgtctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtctaaagcctgcaccccatttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtaatctttggtcttgcccttttgaattcttctagttcagat
ctcaggggttttgctgcccagtttataaaacagaagcttccagatcttctgcgttcttac
atagacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gagcaaatagacgcttttcttaagacactgcgcagagattttccccaagaacgttgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcttg
cctgactctggaggggtagctaaaaccatgatggagagctctctggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcgaact
cattcaggattaacagacggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgacgggaaagataaaagtgaaggcgcacaggcacacacgtggaatgtagaggtt
ttgattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaagggcttcataacgtggtttatggt
attcagaggggcctgggcatggaagtgtttccagtggatttcatttataggccttggaaa
catgcagaaggccagctctccttcatccagcattccctgataaacccagaggtcttttgc
tttgctgactacccctgtcatactgttgctactgacattttgaaagcgccaccagaggat
gacaatcgagaaattgccacatggaaaagcttagatttgattgaatctctgctgaggctt
gcagaggttgggcaatatgagcaagtgaaacaactcttcagcttccctatcaaacactgt
ccggacatgctggtattggccttactacagatcaacacctcctggcacaccttacgccat
gaactcatctctactttgatgccaattttccttggaaaccatcctaactctgccattatt
ttgcactatgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggaacaatatgatcaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcaatgctgctaaatggcactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctaacagataaaataagagaacatggggagccttttattcaggcatgcatgactttttta
aagagaaggtgcccttctattttgggtggacttgccccagagaaagatcaaccgaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctacaggcttgtgcaggg
agtgtttctcaggagttatcagagaccatcctcaccatggtagccaattgcagtaatgta
atgaataaggccagacagccaccacctggagtcatgtcaaaaggtcgacctcctagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttggtggaatggcatctctt
agtataggtggttcagctgctcctcacacgcagagtatgcaaggttttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcatttccacctctttcaacccca
aatcaaacaacagcattcagtggtatcggaggactttcatcacaacttccagtaggtggt
cttggcacaggaagcctgactggtataggaactggggcccttggacttcctgcagtgaac
aacgacccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtgtggccagaggccaatcagcacttc
agtaaagagatagatgatgaagcaaacagctatttccagcgaatatataatcacccacca
catccaaccatgtccgttgatgaggtactagaaatgctacagagatttaaagactctact
ataaaaagggagcgagaagtatttaactgtatgctaaggaacttgttcgaagaatatcgg
tttttcccccagtaccctgataaagaattacacattacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatcaaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactatcctcagtactgtcagcacttggcttctatcagtcac
ttcatgcagtttccacaccatctgcaggagtatatcgagtacggacagcagtctcgagat
cctcctgtgaagatgcagggctctatcacgacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctcctcttgcgggtcaggttaacacaatggta
accacctcaacaacaaccactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatagatacattgcttgtg
gctacagatcaaactgagaggattgtagagcccccagaaaatattcaagagaaaattgct
tttatcttcaacaacctctcacagtcaaatatgacccagaaggttgaagagcttaaagaa
acagtgaaggaagagtttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattccaactttcttgacacattgaagaatccagaa
tttaacaagatggttctgaatgagacctacagaaacattaaagtgctgctgacctctgat
aaagctgcggctaatttctcagatcgttctttgctgaagaacttggggcattggctagga
atgatcacattagctaaaaataaacccattttgcacacggacttggatgtgaaatctttg
ctgctcgaggcttacgttaaaggacagcaagagctgctttatgtggtgcccttcgttgcc
aaggttctggagtccagcattcgcagtctggtttttaggccaccaaacccctggacaatg
gcaattatgaatgtattggctgagctacaccaagagcatgacttaaagttaaacttgaag
tttgagattgaggtgctgtgtaagaaccttgcattagacatcaatgagctcaaacctgga
aacctactgaaagataaagaccgcctgaaaaacttagatgaacaactctctgctccaaag
aaagacgtcaaacagccggaagagcttcctgccatcacgacgacaacaacttctacaaca
ccagctaccagtactacctgtacagccacagttccaccacagccacagtacagctaccac
gacatcaatgtctattctctggcaggcctggctccacacattactctaaaccctacaata
cctttgtttcaggctcatccacagttgaagcagtgtgtgcggcaagcaattgaacgggct
gtccaggagcttgttcatcctgtggtagatcggtcaattaagattgccatgactacttgt
gaacagatagtcagaaaggattttgccctggattctgaggaatccagaatgcgaatagca
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggagcct
ttactgatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacaacaaagggaaatgatggaccaggctgctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgagaaaacatgctcggcaagaaggacgcagatac
tgtgatcctgttgtattaacgtatcaagcggaacggatgccggagcaaatcaggctgaaa
gttggcggtgtggacccaaagcagctagccgtttatgaagagtttgcacgaaatgtgcct
ggcttcttaccgacaaacgacttaagtcagcctacaggatttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtattacagaactggag
cagcacctacatgccattccaccaactctggccatgaatcctcaagcgcaagctctacga
agtcttttggaggttgtagtgttgtctcggaattctcgagatgcgatagctgctcttgga
ttacttcagaaggctgtagagggtttattagatgccacaagtggtgctgatgctgacctg
ctgctgcgatacagggaatgtcatctcttggtactaaaagctttgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggagttgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatctagctcagtcaatggagaatggcttaaactacatggccgtggca
tttgctatgcaattggtaaaaattctgctggtggacgaaaggagtgttgcccatattacg
gaggcagatctgttccataccattgaaaccctaatgaggattaacgctcattccaggggc
aatgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcacggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctcctggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaagactgatgac
ctcataacaaggtttttccgtctttgtactgaaatgtgtgtcgaaatcagttaccgtgct
caagcagagcagcagcacaatccagctgccaatcccaccatgatacgagccaagtgctat
cacaacctggatgcctttgtccgcctcattgcactgttagtgaagcactctggggaggcc
accaacactgtcacaaagatcaatctcctgaataaggttctcgggattgtagtgggagtt
ctcctgcaggatcatgatgttcggcagagtgaatttcagcagcttccctaccataggatt
tttatcatgttgctgttggagctcaatgcacctgagcatgtgttggaaaccattaatttc
cagactcttacagctttctgcaatacattccacatcttaaggcctaccaaagctcctggc
tttgtatatgcctggcttgaattgatctcccatcggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgcacagctgctgattgatttattcaaa
tatttagcgcctttccttagaaatgtggaacttactaaacctatgcaaatcctctataag
ggtactctgagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatccctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccggacccattcactcctaacctgaaggtggac
atgctgagtgagatcaacattgcgcctcggatcctcaccaatttcactggagtgatgcca
cctcagttcaaaaaagatctggattcctatctcaaaactcgatcccctgtcacttttctg
tcggatctgcgcagtaacctacaggtatctaacgagcctggcaatcgctacaaccttcag
cttatcaatgcactggtgctctatgtagggactcaggccatcgcacacatccacaacaag
ggcagcacgccttcaatgagcaccatcacccactcagcacacatggacatcttccagaat
ctggctgtggacttagacaccgagggccgatatctcttcttaaatgcaatcgcaaaccag
ctgcggtacccaaacagccacactcactacttcagctgcaccatgctgtacctttttgcc
gaggcgaacaccgaggcaattcaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccgcatccttggggtcttcttatcaccttcattgagctgattaaaaaccca
gcatttaagttctggaaccatgagtttgtacactgtgccccagaaattgaaaagttattc
caatctgttgcacagtgctgcatgggacagaaacaggctcagcaagtgatggaagggact
ggtgccagttag
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integrated database retrieval system
