Arvicola amphibius (Eurasian water vole): 119801670
Help
Entry
119801670 CDS
T08327
Symbol
Tarbp1
Name
(RefSeq) probable methyltransferase TARBP1 isoform X1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aamp03016
]
119801670 (Tarbp1)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119801670 (Tarbp1)
Enzymes [BR:
aamp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
119801670 (Tarbp1)
Transfer RNA biogenesis [BR:
aamp03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
119801670 (Tarbp1)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
119801670 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
119801670
NCBI-ProteinID:
XP_038168202
LinkDB
All DBs
Position
15:complement(52194516..52242099)
Genome browser
AA seq
1582 aa
AA seq
DB search
MERVLADALLAHSREPGALLGVLCGGEASAERAETLRLVLQRLEERGAGAGGLAEAAHEV
ARGHLVPWLHASPGGGPAGPRVLRAASAALRSCARLAGPELAVALAEEALRELPNVPAVE
LLAAVAPCLRALDDAPLLRRLARASVELALAGDAPPAVGARLLPALAQSAEPALRAAWDT
LASPGPGAEGRTGPELLVLSALAEKLLSSRARHEDLDARLCGRFWRTVQAGLGRAQDALT
RKRARYLLQRAVQVSAELAMDCTCGPQDTMGPSLFWWSEKKKDELLKFWENYILIMEVLE
GNQIHVIKPVLPKLNSLFEYAVSEENGCWLVHPSWLMCIYARMFESENKILTKEGVIHFL
ELYAVRSPLPPYSPELSKFITGPLMDALSESCLYSRSPGQLLGSGSPLGLKLQTFLVAYV
SLLPEEAKSRFLLKFIQRMADRHWCAVPVLFLSRALASVPRCKALGGEGLLALRDVLQCT
MMTHQVLLRGAAQCYLLQTAIHLVDVEKVSLSDVSAFLVSLRQEESLARGTRLWTELCDW
LRINEKYFRQSSIGGSDGHETSLNAYVKNLVQEFVKSPGWETGESGFMPDWLEARLTSLM
VLLAVDVEEMKTQFREKQRTQNVLRIFLDPLLDALGKLGTNAYMPLLRTDRCLQLLVRLL
RSSVPRGSSGQDDEVFTVLQTSVLSAAESVAQFVLRRLTMNELQSVADLDRCQLYLTVLA
ELTSLQVKLGWKAGNPITRIISPLKNACIHHLQGAEDEQEPTLGRQVQRVVSMATLAALC
EAVDRHPVLQLDSPDAEPMDRFLSALPLNQMLKKPRSEEQNSCVHPLENGSVFEDSPSSQ
GWGKIVAQYLHDQWVCLCWLLRKHRLLIPAMESDTLECCLPAVQMPVQTLRSALDVLTVL
PAGHILPVFRCMGMLVPKLLASEESLCMESFDMAWKTVSSLSNTQLTFWPNLKAFVHFVF
NNDILTVAAELKGQAYFRIKEIMCEIIQTSSMKTGVFNILIRHCCQSWVAASSGVSQGLL
SSAKDYSELVLEACVFGTVFRRDQRLIQDVQTFIENLGQDCAANLIIEDTMREDYYVRIC
AVKFLCLLDGSDMSHNLFIEDLAIRLLDKDESASRSRTRYHENSLQHRVKNRVWQTLLVL
FPRFDQNFLNGIIDKIFHAGFTNNQASIKYFIEWIIILILHKFPQFLPKFWDCFSYGEEK
LKTSICTFLSVLSHLDIIIQNIPEKKLVLKQALTVALQWCLSHNFSVRLYALVALKKAWH
LCKALQFEECDAWSTVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETI
FYTLPRLSGVTEEEWIALDKFASFTDIPSNEGSPWYQSGTALSELSPGDWSQEDRGSTLG
EADSQSECADVQKKIIPWGHKALESDLELLFQDRAAKLGKSISRLIVVASLIDKPTNLGG
LCRTCEVFGAAALVVGSLQCVSDRQFQHLSVSAEQWLPLLEVRPAQLTHYLQQKKVEGYT
VIGVEQTAQSSDLAQFRFPEKSLLLLGNEREGIPADLIQQLDVCVEIPQQGIIRSLNVHV
SGALLIWEYTRQQLLGCVGPAS
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgttggcggacgcgcttctggcccacagccgggagcccggcgcacttttg
ggggtactgtgcggcggggaggcgagtgcggagcgggcggagactctgcgcctggtgctg
cagcggctggaggagcgcggcgcgggcgccggcgggctggccgaggcggcacacgaggtg
gccaggggccacctggtgccctggctgcacgcgtctcccggtggagggccggcggggccg
cgcgtgctccgggcggcgagcgcggcgctgcggtcgtgcgcccgcctggcagggcccgaa
ctggcggtggcgctggccgaggaggcgctgcgcgagctgccgaacgtgccggccgtggag
cttctggccgccgtggcgccgtgtctgcgcgccctcgatgatgccccgctgctgcgtcgc
ctggcgcgcgcgtccgtggagctggcgctggccggggacgcgccgcctgccgtgggcgcg
cgcctgctgcccgcgctggcacagagtgcagaaccggcgttgcgcgcggcttgggacact
ctggcttccccgggacccggagctgagggccgcactgggccagagctgctggtgctgagc
gcgctggccgagaaactactgtcgtctcgtgcgcgccatgaggacctcgacgcgcgcctc
tgcggccgcttctggagaaccgtgcaggctggactgggccgcgcacaggacgcgctcacg
cgcaagcgcgcgcgctacctgctgcagagggctgtgcaggtgtctgcagagctggcgatg
gactgtacctgcggtccccaggacacaatgggtccaagcctgttctggtggtctgagaag
aaaaaagacgagcttctaaagttctgggaaaactatatcttgatcatggaagtcctagag
ggaaatcagatacatgtcataaagccagtcttacccaagctaaacagtctgtttgaatac
gcagtatcagaggaaaatggctgctggcttgttcatccctcctggctcatgtgcatttat
gcaagaatgtttgaaagcgagaataaaatcctgaccaaagaaggtgtgatccacttcttg
gagctgtatgccgtgagatcgcctctgcctccgtattcaccggaactctccaagtttatc
actggcccgctgatggatgccctctcagagagctgtctgtacagcagatccccagggcaa
ctgttgggaagtggctctcccctgggattaaagctgcagacgtttctggtcgcttacgtt
tctcttcttccagaagaagcaaagagtcgtttcctgttgaagttcatccagaggatggca
gatagacactggtgtgcggtgccagtgctgttcctctccagggctttggcaagcgtcccc
agatgtaaggccctgggtggagaagggcttttagccctcagggacgttctccagtgcacc
atgatgacacaccaggtcctcctgagaggggcagcacagtgctatcttctgcagacagcc
atacatctggtggatgtggagaaagtgtctctttctgatgtctccgcctttctcgtgtct
ctgagacaagaggagtccttggcacgggggacccgattgtggacagagctctgtgactgg
ctgcgtatcaacgaaaaatactttagacagtcctcgattggtggctctgacggacatgag
acatcgttaaatgcttacgtgaaaaacctagttcaggagttcgtgaagtctcctggttgg
gaaacaggagaaagcggcttcatgccagactggcttgaagccaggctgacctctctgatg
gttctgctggctgtggacgtggaagaaatgaagacccaattcagggaaaagcagaggact
cagaatgtgttgcggatcttcttagaccccctgctggatgctctggggaagctgggcacc
aatgcctacatgcccttgctgaggactgataggtgcctccagctgctggtgaggttgctg
cgttcttctgtgccaagaggttccagtggccaggatgatgaggtgttcaccgtcctccag
acctccgtcctgtctgctgccgagagcgtggctcagtttgtgctcaggagactcaccatg
aatgagctgcagagtgtggcagatctggaccgctgccagctatacctgacggtgttggct
gagcttacgagtctccaggtgaagctgggctggaaagcaggcaaccccatcacccgaatc
atctctcctttgaaaaacgcatgcattcaccatctgcagggggcggaggatgaacaggag
ccaaccctgggtcgtcaggtgcagagagtggtcagcatggctaccctggcagctctgtgt
gaggctgtggatcggcacccagtgctgcagctggattctcctgatgccgagcccatggac
aggttcctgtctgctcttccactcaatcagatgctgaagaagccccgctcagaggagcag
aacagctgtgtgcatcccttggagaacggcagtgtttttgaagactcgccatcttctcaa
ggatgggggaaaattgtggcccagtatctgcacgatcagtgggtctgcctctgctggctg
ctgaggaaacaccgcctccttatcccagccatggaaagtgacacgctggagtgctgtctc
cctgctgtccagatgcccgtgcagaccctgcggtcggccctggatgtcctcaccgtcctc
cctgccggccacatcttacctgtgttccgctgcatggggatgctagttcccaagctcctg
gcttccgaggagtcgctctgcatggaatcttttgacatggcctggaaaacggtatcttcc
ctgagcaacacccagctgacgttctggcctaacttaaaagctttcgtccactttgttttc
aataatgacattcttaccgttgctgcagaactcaagggccaggcatacttcaggatcaag
gagattatgtgcgagataatccaaacgtcctccatgaaaacaggagtcttcaacattctg
atccgtcactgctgccagtcttgggtagcggcttcttccggggtgtcccagggcttgctc
tccagtgctaaggattacagcgaacttgtcctggaggcttgtgtgtttggaacagtgttt
aggcgcgatcagagacttattcaggatgtccaaaccttcatagaaaaccttggacaagac
tgtgcagcaaacctcatcatagaggacactatgagagaagattattatgtgcgaatctgt
gctgtcaagtttttgtgtctgctagatggctctgacatgtcccacaacttgtttatagaa
gatcttgccattagactcctggataaggatgagtcagcatccaggtccagaactcgctac
catgagaactccctacagcaccgggtgaagaaccgtgtgtggcagacgctgcttgtcctg
ttccccagatttgatcagaacttcttgaatgggattattgacaagattttccatgctggc
ttcaccaacaatcaagcatctataaaatattttattgagtggattattatattgattctt
cataaattccctcagtttcttccaaagttctgggactgtttttcttacggtgaagaaaaa
cttaaaacaagcatttgtacatttttatctgttttatctcatttggacatcatcattcag
aatattccggaaaagaagctggttctgaagcaggccctcaccgttgccctgcagtggtgt
ctgagccacaacttcagcgtccgactctacgctctggtggccctcaagaaggcctggcac
ctgtgtaaagccctgcagttcgaagagtgtgacgcctggagcacagtcattgagtgcagt
ctcagccaggcggaaagcatgcatggagcagggaatgccaggaagaactggcagcgcatc
caggaccatttcttcttctccacgttccaccccctgaaggactactgtctggagaccata
ttttacaccctcccacggctctcgggtgtcactgaagaggagtggatcgccctggataaa
ttcgccagcttcacagacatcccttccaatgaagggtccccatggtaccaatctgggacc
gcactgagtgagctgagtccaggagactggtcccaggaggaccgagggtctaccttgggt
gaagcagacagccaatcagagtgtgcagatgtccagaagaagatcatcccgtggggacac
aaggctctggagtcagacctggagcttctgtttcaggatcgggccgccaagctcggcaag
tccatcagcagactcatcgttgtggcctcgctcatcgacaagccgaccaacttaggaggg
ctgtgccgcacctgtgaggtgtttggagctgcggcactcgtggtgggcagtcttcagtgt
gtcagcgacaggcagttccagcacctcagtgtctctgcggagcagtggctccctctgcta
gaggtgagaccggcgcagctgacgcattatctgcagcagaaaaaggtggagggctacacc
gtcatcggtgtggagcagacagcgcagagctcagacctggcccagttccgctttcccgag
aagtcgctgctcctgttgggaaatgagcgggaagggatcccagccgacctgatccagcag
ctggacgtgtgtgtggagattcctcagcagggcatcatccgctcgctcaacgtgcatgtg
agcggagctctgctgatctgggagtacaccaggcagcagctgctcgggtgtgtggggccc
gcatcctga
DBGET
integrated database retrieval system
