Arvicola amphibius (Eurasian water vole): 119801861
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Entry
119801861 CDS
T08327
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119801861 (Ddx39a)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119801861 (Ddx39a)
Spliceosome [BR:
aamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119801861 (Ddx39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119801861
NCBI-ProteinID:
XP_038168515
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All DBs
Position
15:15570271..15578809
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AA seq
427 aa
AA seq
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MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaagatgtggaaaatgagcttttggactatgatgaagatgaagagccccaa
gcaccccaggagagcactccagctcccccaaagaaagatgtcaaagggtcttacgtgtcc
attcacagttccggtttccgggactttctgctgaagccggagctcctgagagccatagtt
gactgtggttttgagcatccttcagaggtccagcatgagtgtattccccaggccattctg
ggtatggatgtcctgtgccaggcaaagtctgggatgggtaagacagctgtgtttgtgctg
gccaccctgcagcagattgagcccatcaatggccaggtatcagtactggtcatgtgccat
acaagggagctggccttccagatcagcaaggaatatgagcgcttctctaagtacatgccc
agcgttaaggtatctgtgttctttgggggcctctccattaagaaggatgaagatgtgttg
aagaagaactgtccccatgttgttgtggggacaccaggccggatcctggcactcgtacgg
agcaggagcctcaacctaaggaatgtgaaacactttgtgctagatgagtgtgacaagatg
ctggagcagctggacatgcgccgggacgtgcaagagatctttcgcctgacaccccatgaa
aagcagtgcatgatgtttagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcccatggaggtgtttgtggatgacgagaccaagctcacactgcacggg
ctacagcagtactatgtcaagctcaaggacagtgagaagaaccggaagctcttcgacctc
cttgacgtcctagagtttaaccaggtggtgatctttgtcaagtctgtgcaacgctgcatg
gctctggcccagctcttagtggaacagaacttcccagccattgccattcaccgaggcatg
ccccaggaggagcgcctatcccgctaccagcagttcaaggacttccagcggcgcatcctg
gtagctaccaatctgtttggtagaggtatggacattgagcgagtgaacatcgtcttcaac
tatgacatgccagaggactcagacacctaccttcaccgggtggctcgtgctggtcgcttt
ggtactaaaggcctggcggtcacttttgtatctgatgagaatgatgccaaaatcctcaat
gatgttcaggaccggtttgaagtgaatgtggcagagcttccagaagaaatagatatctct
acatacattgagcagagccgataa
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