Arvicola amphibius (Eurasian water vole): 119801907
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Entry
119801907 CDS
T08327
Symbol
Taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119801907 (Taf1c)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
119801907 (Taf1c)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
119801907
NCBI-ProteinID:
XP_038168589
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All DBs
Position
15:complement(45530556..45537419)
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AA seq
841 aa
AA seq
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MDFPSSLRPSLFMTGPLGMTDGPDLSFMCSWRDALTMPGSQPPNCKDRTVPLVKNLLWEP
TTPGPLPLLPPGPDPWEPGMTPRDLLFRGGHRYQFRPQVGLDVTEQLSRFLWDHGDIAFA
PLGRLMLENFRLEGNKGYSKKMTIVSVKRLLQDLGGHQPWGCPWAFLSHRLRRFSILGGP
VLSRSVSMLLGRLLHEELALRWEQLLLDEAFTGGALAWLPGRTARVGQLVYPSGGALDKL
YFQEVSVNSGGNPRVFEDPGHIQLRGPVRQVVTSTVQGETFLAVRSDYHCAMWKTDKQGP
PAPLKVLQVEKGATGVSLSPHLPGEMAICSRSGTVCLWTPQDGLQLVYKDPETLAFRDPS
PWRWADFTAHPRVLTVGDRTGVKMVDIQGPPGCGLLLFRAGAEAACQKGERVLLAQYLGQ
PGTTCTPLHLICTQFSIYLMDERLPLVPMLKWDHGLPSSPLFARLLPPASPGFPRPLLLG
GQGGQLQLLHITGEGPSMPQLAGPPQSLPSIVDSLSAFPLLEPRRQQQLQERLEAPVIGL
AAAPPCASVPTLLLFQLSAAGDIFYQHLRLQSASSLGEGSLDHPAPEGPAPKATAPMDQS
SWTPQASVRCSRWAEALMELSPTCPVWAAPTFSHRRFLGHMEQQKSQPMSQKLRAAMAKG
QLLRPEDLGTLPRAEPPPAPQCSQQDELTERLAEAWENGVAAWWKGHRGQTSGSQTQTKR
PKRRTQLSSTFSSSLTSYLDIPDTSSPSCSQNLSTSEAGPQPPGTQPSQELTQELWTESV
QRERQQTLQDYMAKVPLQKDTPGPVATPPSQASSLRAMPLRRQAPVLSGSHPPQKKSRMG
F
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggatttccccagctccctccgcccctcattgtttatgactggtcctcttggcatgact
gacggccctgacctgtccttcatgtgcagctggagagatgcactcaccatgcctgggtct
cagcccccgaactgcaaggaccggacagtgccattggtcaagaacctgctgtgggagcca
acgacaccaggacccctccccttgctgcctcctggtcctgatccctgggaacctggcatg
acccctcgggacctccttttccggggaggtcaccgctaccagttccgacctcaagttggg
ctggatgtcactgagcagcttagccgcttcctgtgggaccatggggacatagcctttgca
cccctgggaaggctcatgctggagaacttcagattggagggaaacaagggctactcgaaa
aagatgaccatagtcagcgtgaagaggctgcttcaggacctcggtggacaccagccctgg
gggtgtccttgggctttccttagccaccggctccgtcgcttctccatccttgggggtcct
gtcctgagcaggtcagtgtccatgcttctgggcaggctgctgcatgaagagctggctctg
cggtgggagcagttgctgctggatgaggccttcactgggggtgccttggcctggctccct
ggaaggacagcacgggttggacagctggtctaccctagtggaggtgccctggacaagctg
tatttccaggaggtcagtgtgaactcaggtggcaatccccgggtctttgaggaccctggg
catatccagctgcggggacctgtacggcaggtggtgaccagcactgtccagggagaaaca
ttcctggctgtccgctctgactaccactgtgccatgtggaagactgacaagcaagggccg
ccagcacccctgaaggtgctgcaggtggaaaagggggccactggtgttagcctcagccct
cacctgccaggagagatggctatctgcagccgttctggaactgtatgtctgtggacccca
caagatgggctgcagctagtctacaaggaccctgagacgcttgcctttcgtgatccttct
ccctggcgctgggcagacttcactgcccacccccgggtgctgaccgtgggtgaccgcaca
ggtgtgaagatggttgatattcagggacccccaggctgtgggctgctgctgttccgtgcc
ggagctgaggccgcttgccagaaaggagagcgggtgctgcttgcccagtaccttgggcag
ccgggtaccacctgtactcctctgcatctaatctgcacccaattctcgatctacctgatg
gatgagcgcctccccctggtgccaatgctcaagtgggaccatggtctgccatcttctccc
ctgtttgctcgcctgctacctccagctagccctggcttcccacggcccctgctactgggg
ggccagggtggacaacttcagctgctgcatataacaggagagggcccctccatgccccag
ctggcagggcctcctcagtctctgccctccatcgtcgactccctctccgcctttccccta
ctggaacccaggaggcagcagcagctgcaggagcgtctggaggcaccagtcataggtctg
gctgctgctccaccctgtgcctctgtcccgacgctgctgctcttccagctctcggcagct
ggagacatcttctaccagcacctacgcctccagtcagcctccagtcttggagaaggatca
ctggatcacccagcaccagagggccctgcacccaaggcaacagcacctatggatcagtcc
tcttggacccctcaggccagtgtccgctgcagccgttgggcggaagccctgatggagctg
tcccctacttgtccagtgtgggctgcccccaccttttcccaccgccgttttttgggccac
atggagcagcagaaaagccagcccatgtcacagaagctccgagcagccatggccaaggga
cagctcttgcgacctgaggatctgggtacactccccagggcagagccaccccctgcacct
cagtgcagccagcaggatgagctcactgagcgcttggcagaagcctgggaaaatggggta
gctgcctggtggaaagggcaccgaggtcagacctcagggtcccagacacagaccaagcgg
cctaagcgccggactcagctgtccagcaccttttcttcctcactcacaagctacttggac
atcccggataccagcagcccctcttgtagccaaaacctttctacctcagaggctgggccc
cagcccccagggacccagccctcccaggagttgacacaggagctgtggacggaaagtgtg
cagcgtgaacgtcaacagacactccaggactacatggccaaggtgccacttcagaaggac
actccaggacctgtggctacacctccttcccaggcttccagcctccgggccatgcctttg
aggcggcaggcacctgtcctgtctggctcccatcctccccagaagaagtcacggatgggc
ttctga
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