Arvicola amphibius (Eurasian water vole): 119801920
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Entry
119801920 CDS
T08327
Symbol
Pkd1l2
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119801920 (Pkd1l2)
04091 Lectins [BR:
aamp04091
]
119801920 (Pkd1l2)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119801920 (Pkd1l2)
Lectins [BR:
aamp04091
]
C-Type lectins
Others
119801920 (Pkd1l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PLAT
REJ
GPS
Motif
Other DBs
NCBI-GeneID:
119801920
NCBI-ProteinID:
XP_038168614
LinkDB
All DBs
Position
15:complement(43154908..43211981)
Genome browser
AA seq
1695 aa
AA seq
DB search
MWLLSPYTGNLTCVLSMGDGHTFDPYYPPSVVSHVTHQFTAPGEFTVFAECTTSDWHVTA
QKQVVLRDRRELPHVTGCTNLSGSGASLLCQAVFGNPLWIQVDLDAGAGVTYAVLSGNIT
LAEFTTQRGLRPYNLTLDRDTQELLGPGKHHLNIQAVANSTASAPSGSITIHLVELLWGL
QASWASDHVELGCDLVVNVSVARGTLEEVTIEVAGLNANFSQKEESGGQSSGTYHVAIPV
EGTFLVTVRVRNAVSDLSSDVGNITVTAPSSLQEPSGINAEAKNGDEGDRKVFTEPELYV
DHFTDVTLSWPDDDPDLGFRWSCGHCWAQWNDCVEGQLLHTDQRRLVLPTSCLPPLNSAV
TLHLAILRGQELERETEQCLYVFSPLDLRPQISCENCRPVKADQDVLLTVTVGDESPVAT
FSWYLDDTSSEKAEPLPDACRLRGFWPRSLTLLQGDSSTLLLNSSLLQTWGPVVRIRVTA
LTSHAYGEDTYVISMLPIPEVPACAIVPEEGTVLTSFAVFCTAATAPGPLEYCFCLQSGS
CLHCGPEPALPAVFLPLGKEKDGFVLTVVISVTNQAGDRQQIQVAAKVGRGNTGSDYVTF
QATVAERISSALQDEHSGDQFLHFVKAVSSELNQEDQSPGSGQLRTETKRKVRELVLRSL
SMLTIDPENMQRVQGLAEALREVTRRSEELTSVAQWEASQVLQHAAEALLTASAKVHPED
QRRQEAIRAMFQAVGTVLEASLSQGSEEPKEANRSQAHIMAQLLQVVDHLQTALLLGTLP
GGLPAILEAPSISVYTDRIQPRSWQGSSVHTTTADSVTFTLPAATSLCPVEDSQEPVDIR
MMSFSRNPFPSRSRFDVSGTVGGLRLTSSSGHPISVKNVTQNIEILLPRISEHSEPTMLS
LATPETLRVNMTAREAALGIQLHWGPGIPLTLSLGYGYHPNETSYDAQTHLPPVAATGEL
PTWILGPEDLPFGEGTYYLRVVPKDNLEPASGRDLTVGITTFLSHCVFWDESQETWDNSG
CQVGPRTTTSQTHCLCNHLTFFGSTFLVMPNAIDVHQTVELFATFEDNPVVVTTVACLCM
VYVLVVIWARKKDIQDQSKVKVIVLEDNEPFAQYHYLVTVYTGHRRGAATSSKVTLTLYG
SDRESEPHHLSNPDAAVFERGGVDVFLLSTLFPLGELQSLRLWHDNSGDQPSWYVSRVLV
YDPAADRKWHFLCNSWLSIDVGDCVLDKVFPVATEQDRKQFSHLFFTKTSTGFQDGHIWY
SVFCNSPRSSFTRVQRVSCCFSLLLCTMLTSIMFWGIPKDPAEQKMDLGKIEFTWQEVMI
GLESSILVFPINLLIVQIFRNTRPWRPLEKDEKQEQGPSNLTPSLQPTEEGLLTPETVTK
GVQTLLCSLFKALKVLPPASGWDTKNLTDINYLLALMEDLVCPEGTTGQGFWEEMLERED
PCTSTHGPVHLKENTWHPKPKLAGSGLWRDSIYRRCLYLQLEHVERELRLVGPQGFLHQQ
SHAQALKQLHALKGHLWGQPGTPAIAYASTPRVSKSPRGLPWWCVLVGWLLVAATSGVAA
FFTMLYGLHYGRASSLRWLISTAVSFVESVFITQPLKVLGFAAFFALVLKREDDEEILPS
LPGHLSGPGSYALFRTQRRSSKDAYQPPLATAIETMKATRLKEQKAFALIREILGGQSPT
PVFSAHPGADLQRVL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgtggctcctttctccctacactggaaacctgacctgtgtactcagcatgggagatggc
cacacgtttgacccctactaccctcccagtgtggtcagtcatgtgactcaccagttcacc
gcccctggggagttcactgtgttcgctgagtgtacaaccagtgactggcacgtgaccgct
cagaaacaggtggtgctgcgagacaggagggagctacctcacgtcaccgggtgcaccaac
ctctccggatctggagccagtcttctctgtcaggccgtcttcgggaaccctctgtggatt
caggtggatctggatgcaggagccggggtgacttatgctgtgctttcgggtaatataact
ctggctgagttcaccacgcagaggggcttgagaccttacaatctgactctggacagagac
acccaggagctgctgggccctgggaagcaccatctgaacatccaagctgtggccaacagc
accgcctctgccccctctggaagcatcactatccacttggtggagctcctgtggggcctg
caggcctcctgggcttccgaccacgtggagcttgggtgcgacctggtggtcaatgtctca
gtggctcgtggtaccctggaggaggtgaccattgaggtggcaggactcaatgcaaacttc
tcgcagaaggaagagagtggtgggcagtcatccgggacctaccatgtggcgattcctgtt
gaaggcacctttctggtcaccgtgcgtgtgcggaacgctgtctcagacttgagctcggac
gtggggaacatcaccgtcacagccccttccagtctccaagaaccatctggaataaatgct
gaagcaaagaatggagacgaaggggacaggaaggtgttcactgagcctgaactgtacgtg
gatcattttacagacgtcacgctgagctggccagatgacgacccagacttgggcttccgc
tggtcctgcggacattgctgggctcagtggaatgactgtgtggaagggcaactgctccac
acagaccaaaggcggctggtgctccctacctcctgcctgcctccgctcaactctgctgtc
accctgcacttggctatcctaaggggccaggaactggagagagagacagaacagtgcctc
tatgtgttctctcccctggacctcaggcctcaaatcagctgtgagaactgccggccagtg
aaagccgaccaagacgttttgctcacagtcactgtgggcgatgaaagtccagtggccacg
ttcagctggtacttagatgacacctcatcagagaaggctgagcccctccccgatgcctgc
agactcagaggattttggccgcgctcgctgaccctccttcagggcgactcctccacgctg
ctactgaacagcagcctcctgcagacctggggacctgttgttcggatccgggtcacagca
ctgaccagccatgcctatggggaggatacctacgtgattagcatgctacctataccggag
gtgcccgcctgtgcgatcgtcccagaggagggtactgtcctgacgagctttgctgtcttc
tgcactgccgccacagccccgggtcccctggagtactgcttctgtctgcagtcaggttcc
tgcctccactgtggccctgagccagcactccctgctgtgttcctaccacttgggaaagag
aaggatggctttgtcctgacagtggtcatctctgtcaccaatcaggcaggggacagacag
cagatccaagtggcagctaaggtgggccgtgggaacacaggtagtgactatgtgacattc
caggctactgtggcagagagaatctcctcagctctgcaagatgagcacagcggtgaccag
tttctacactttgtcaaggctgtgtcctctgaacttaaccaggaggaccagagcccaggc
tctgggcagcttagaacggaaaccaaacggaaggtcagagagcttgtgctgagatcgctg
tccatgctcaccattgatccagagaacatgcagagggtgcagggtttggctgaggcgctg
agagaggtgacccgccgtagcgaggagctcacctcggtggctcagtgggaggccagtcag
gtcctgcagcatgcagctgaagctctgttgacagccagtgccaaggttcatcctgaggat
cagagacgccaagaagccatcagggccatgtttcaagctgtgggaaccgtactggaagct
tccctcagccagggatctgaagaacctaaggaggccaaccgcagccaggctcacatcatg
gcccagctacttcaggttgtagatcatttgcagactgccctcctgctggggacattgcca
gggggccttccagccatcctagaagccccctccatctctgtgtacacagacagaatacag
ccacggagttggcaaggctcttcagtgcacactaccaccgctgactctgtaaccttcacc
ctgccggccgccacctccctttgtcccgtggaagacagccaggagcctgtggacataagg
atgatgagtttctcacggaaccccttcccttcccgaagccgatttgatgtcagcggaact
gttggcggactccgtctgaccagctccagtggccaccccatttcagtgaagaacgtgaca
cagaatattgagatcctgttgccgcggatttcagaacacagcgagccgacgatgctgagc
ctggccaccccagaaactctgagggtgaatatgactgccagggaggcagctctagggatc
cagctgcactggggacccggcatcccactcacactcagtctgggctacggctaccacccc
aatgagaccagctacgatgcccaaacacacctgcctcctgtggctgccacaggtgagcta
cccacatggatcctgggcccagaggacctgccctttggggaaggaacctactatttgaga
gtggttcccaaggataacctggagcctgcctctggcagggacctcacagttggcattacc
accttcctgtcacattgtgtgttctgggatgaaagccaggagacctgggacaactctggg
tgccaggtaggtccacgaaccaccacctcccagacacactgcctttgtaaccacctcacc
ttctttggaagcacattcctggtgatgcccaatgccattgacgtccaccagactgtggag
ctctttgccacttttgaggacaacccagtggtggttaccacagtggcctgcctctgcatg
gtctacgtgctggtggtgatctgggccaggaaaaaggacatacaggatcagagcaaggta
aaagtcatagtgctggaggacaatgagccctttgcccagtatcactacctggtgacggtc
tacacgggacaccgacgaggggcagccacgtcttcaaaggtgacgctcacgttgtatggc
tcggatagagagagtgagccccaccacctgtcaaaccctgatgctgcagtttttgagcga
ggaggggtggacgtcttcctgctttccactctgttccccctgggagaactgcagagcctc
aggctgtggcatgacaactctggggaccagccatcatggtatgtgagccgggtgctggtc
tatgaccctgctgcggaccgcaaatggcatttcctctgcaactcgtggctgtccatcgat
gttggcgactgtgtcctcgacaaggtgtttcctgtggccacagagcaagacaggaagcag
tttagccacctgtttttcacaaaaacctccacgggcttccaggacggacacatctggtac
tcggtcttttgtaactctcctcggagcagcttcacacgcgtgcagagggtgtcctgctgc
ttctcgctgctcctctgcaccatgctgaccagcatcatgttctggggtatcccgaaggac
cccgctgagcagaagatggacttgggcaaaattgagttcacttggcaggaggtgatgatt
gggctggagagctccatccttgtgtttcccatcaacctcctgatcgtccagatctttcgg
aacacccgaccttggcgcccgctggaaaaggatgagaagcaggagcagggaccctccaac
ctgactccttcactgcagcccacagaggagggacttctgacacctgaaacagtgaccaag
ggtgtacagactctcctctgctcactgtttaaagctctgaaggtgctgcccccagcttcg
ggctgggatactaagaacctgacggacattaactacctcctggccttaatggaagacctc
gtctgtccagagggcacaacaggacaggggttctgggaggaaatgctagagagggaggac
ccttgcacctccacccatgggcctgtccatctgaaagagaacacatggcaccccaagccc
aagctggcagggagtgggctttggagggacagcatctacagacggtgtctctaccttcaa
ttggagcatgtggagagggagctgcggctggtggggccccaaggcttcctgcatcaacag
agtcatgcccaggccctcaagcagctgcatgccctgaagggccacctctggggacagcct
ggcaccccagcgatagcatacgccagcactcctcgggtcagcaagtcccctcgcggcctg
ccctggtggtgtgtcctagtgggctggctcctggtggcagccaccagcggggtggcggcc
ttcttcactatgctgtatggactgcattatggaagggccagctctctccggtggctcatc
tccacggctgtgtcctttgtggagagtgtgttcatcactcagcccctgaaggtcctgggt
tttgctgctttctttgcactggtcttgaagagagaggatgatgaagagattttgccctca
ttaccaggacatctatctggcccaggctcctatgccttgttccgaacacaaagacgcagc
agcaaggatgcgtaccagcctcccctcgccactgccatcgagacgatgaaagccactcgc
ctcaaggagcagaaagcatttgcactcatcagagaaatcctgggtgggcagtctcccaca
cctgtattctcagcacatcctggagctgacttgcagcgtgtcctttga
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