Arvicola amphibius (Eurasian water vole): 119802154
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Entry
119802154 CDS
T08327
Symbol
Dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119802154 (Dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119802154 (Dhx38)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119802154 (Dhx38)
Spliceosome [BR:
aamp03041
]
Complex C
Other components
Step II factors
119802154 (Dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
Flavi_DEAD
Microtub_bd
AAA_30
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
119802154
NCBI-ProteinID:
XP_038169020
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All DBs
Position
15:36362714..36381194
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AA seq
1227 aa
AA seq
DB search
MEDIVEDASIHRLEGTDLDSQVGGLICKTKSAASEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRVSSYKDWEESKDDQKDADEEGDEQAGRSGRKDRHYRSARVETPSH
PGGVSEEFWERSRQRERDRREHGVYASSKEEKDRKKEKSRDRDYDRRRDRDERDRSRHSS
RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR
DSERSHRPFTRDRDRTVRSKYSEDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERRKAQHKHWELAGTKLGDIMG
VKKEEEPDKSVMEDGKVDYRTEQKFADHMKEKSEASSEFAKKKSILEQRQYLPIFAVRQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDADKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacatcgttgaggatgcctccatccaccggctggaaggcaccgatctggactct
caggttggaggtcttatttgcaagaccaaaagtgcagccagcgagcaacatgtcttcaaa
gcccctgctccccgcccttcactgctgggtctggacttactggcgtccctgaaacggagg
gagcgagaggaaaaggatgatggggaggacaagaaaaaatccagagtctcttcttacaaa
gactgggaggagagtaaggatgaccagaaggatgctgacgaggagggcgatgagcaggct
ggccggagtggccgcaaggacaggcattaccgatctgctcgggtagagactccgtcccac
cctgggggtgtgagtgaggagttttgggaacgcagtcggcagagagagagggatcggagg
gagcatggggtctatgcctcctccaaagaagaaaaggatcggaagaaggagaaatcccgg
gatcgagactatgaccgcaggagagacagagatgagcgggacagaagtaggcacagcagc
agatcggagcgagacggaggctcagagcgcagcagcagaagaaatgagccagagagccct
cgacatcggccgaaagatgcagccaccccttcaaggtccacctgggaggaggaggacagc
ggctatggctcttcaaggcgctctcagtgggaatcaccctccccaacaccttcctaccgg
gactctgagcggagccatcggcccttcactcgagaccgagataggacggtgaggagcaag
tactcagaggacacacctctgccgaccccctcctacaagtacaacgagtgggctgatgac
agaagacacttggggtcaaccccacggctttccaggggccgaggacgacgagaggatggc
gaagaagggatttcctttgacactgaagaggagcggcagcagtgggaggatgaccagcgg
caagcagaccgggactggtacatgatggacgagggctacgatgagttccacaatcccctg
gcctactcgtctgaggactatgtgaggcggcgggagcagcacctgcacaagcagaagcag
aaacgcatttcagcccagcgcaggcagatcaatgaggataatgagcgctgggagacaaac
cgaatgctcaccagtggggtggtccatcggctggaggtagatgaggactttgaagaggac
aatgcggccaaggtgcatctgatggtgcacaacctggtgcctcctttcctggatgggcgc
attgtcttcaccaagcagccagagcctgtaatcccagtgaaggatgccacctcggacctg
gccattattgctcggaaaggcagccagacagtccgcaagcacagggaacaaaaggagcgg
aggaaggctcaacacaaacactgggaactggcagggaccaaactcggagacataatgggt
gtcaaaaaggaggaagagccggataaatctgtgatggaagatgggaaagtggactacagg
acagagcagaagtttgcggatcacatgaaggagaaaagtgaggccagcagtgagtttgca
aagaagaagtcgatcctggagcagaggcagtacctgcccatctttgcggtgcggcaggag
cttctcaccatcatcagagataacagcattgtgattgtggttggggagacagggagcggc
aagaccactcagctgacccagtacttgcatgaagatggctacacggattatgggatgatc
gggtgtacccagccccggcgtgtggctgccatgtcagtggccaagagagtcagtgaagag
atggggggaaaccttggcgaagaggtgggttacgccattcgttttgaagactgcacttct
gagaacaccttgatcaaatacatgactgacgggatcctgctccgggagtccctccgggag
gctgacctggaccactacagtgctatcattatggatgaggcccatgaacggtccctcaac
accgacgtgctctttgggctgctccgggaggttgtggctcggcgttcagacctgaagctc
atcgtcacatcagctactatggatgcagataaatttgctgccttttttgggaatgtaccc
attttccacatccctgggcgtacctttcctgtggacatcctcttcagcaagaccccacag
gaagattacgtggaggctgcggtgaagcagtccttgcaggtccacctgtctggggcccct
ggggacatccttattttcatgcctggccaagaagacattgaggtgacgtctgaccagatt
gtggagcacctggaagaactggagaacgcgcctgccttggccgtgctgcccatctactcc
cagttgccttctgacctccaggccaaaatcttccagaaggctccagatggcgtccggaaa
tgtattgttgctaccaacattgcggagacatctctgactgttgatggcattatgtttgtt
attgactctggctactgcaagttaaaggtcttcaaccccaggattgggatggatgctctg
cagatttaccccattagccaggccaacgccaaccagaggtcagggagagctggcaggacg
ggcccaggtcagtgtttcagactctatacacagagtgcttacaagaacgagctcctgacc
accaccgtgcctgagatccagaggaccaaccttgccaacgtggtgctgctgctcaagtcc
ctgggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactccatgtaccagctctggatcctgggggccctggataacacaggtgggctcact
tccacgggacggttgatggtggagttcccattggacccagctctctccaagatgctcatc
gtgtcttgtgacatgggctgcagctccgagattctgctcatcgtctccatgctttcagtc
cctgccatcttctacagacccaagggcagagaggaggagagcgaccaaatccgggagaag
tttgctgtccctgaaagtgaccacctgacctacctgaacgtctacctgcagtggaagaac
aacaactactccaccatctggtgcaacgaccatttcatccatgccaaggccatgcggaag
gttcgggaggtacgagctcagctcaaggatattatggtgcagcagcggatgagcctggcc
tcgtgtggcaccgactgggacattgtcagaaagtgtatctgtgctgcctatttccaccag
gcagccaagctcaaggggattggggagtacgtgaacatccgcacagggatgccctgccac
ttacaccccaccagctccctctttggaatgggctacacccccgactacattgtttatcat
gaactggtcatgaccaccaaggagtacatgcagtgtgtgaccgctgtggacggagagtgg
ctggcggagctgggcccaatgttctacagtgtgaagcaggcgggcaaatctcggcaggag
aatcgtcgtcgggctaaagaagaagcctctgccatggaggaggagatggccctggccgag
gagcagctgcgggcccggcggcaggagcaggagaaacgtagcccactgggcagtgtcagg
tccacgaagatctacactccagggcgcaaagagcagggggagcccatgacacctcgccgc
acaccggcccgctttggactgtga
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