Arvicola amphibius (Eurasian water vole): 119802160
Help
Entry
119802160 CDS
T08327
Symbol
Smarca5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119802160 (Smarca5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119802160 (Smarca5)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119802160 (Smarca5)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
119802160 (Smarca5)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
119802160 (Smarca5)
RSF complex
119802160 (Smarca5)
WICH complex
119802160 (Smarca5)
B-WICH complex
119802160 (Smarca5)
NORC complex
119802160 (Smarca5)
BRF complex
119802160 (Smarca5)
NuRF complex (fruit fly)
119802160 (Smarca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
119802160
NCBI-ProteinID:
XP_038169025
LinkDB
All DBs
Position
15:complement(19152316..19188686)
Genome browser
AA seq
1050 aa
AA seq
DB search
MSSAAEPPPPPPPESAPSKAAAAGAGGSGNKGGPEGGAAPAAPSCASGAGPADAEMEEVF
DDSSPGKQKEIQEPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKP
GRPRVKKDEKQNLLSVGDYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRD
YQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLH
NWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNW
RYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSA
DDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQRE
WYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNS
GKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSI
NAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTV
RVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVF
ASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREK
QKIAFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLF
ELLEKEILYYRKTIGYKVPRSPDLPNAAQAQKEEQLKIDEAEPLNDEELEEKEKLLTQGF
TNWNKRDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMA
QIERGEARIQRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKL
GFDKENVYDELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAE
KKKRGPKPSTQKRKMDGAPDGRGRKKKLKL
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggcggccgagcctccgccgcccccgcctcccgagagcgcgccttccaaggcc
gcggcggcgggcgccggcgggagcggcaacaaaggcggccccgagggcggcgcggcgccg
gcggccccgtcgtgtgcttcgggcgcggggcccgcggacgctgagatggaggaagtattt
gatgattcatcacctggaaagcaaaaagaaattcaagaaccagatcctacatatgaagaa
aaaatgcaaactgaccgagcaaatagatttgagtatttactaaagcagacagagctgttt
gcgcatttcatacagcctgctgctcagaagactccaacctcacccttaaagatgaaacca
gggcgtccacgggtaaaaaaggatgaaaaacagaatttgctctcagttggcgactaccga
caccgtagaacagagcaagaggaggatgaagaactattaacagaaagctctaaagcaact
aatgtctgtactcgatttgaagactctccatcatatgtaaaatggggtaaactgagagat
tatcaggtccgaggattgaattggctcatctctctgtatgaaaatggcatcaatggtatc
cttgcagatgaaatgggtttgggaaagacacttcaaacaatttctctccttgggtacatg
aaacactatagaaatattcctggtcctcatatggttttggttcccaagtctacattgcac
aactggatgagcgaattcaagagatgggtgccaacactcagatctgtttgcttgatagga
gataaagagcaacgagctgcatttgtcagggatgttttattaccaggagagtgggatgtg
tgcgtcacatcttatgaaatgctcattaaagagaagtctgtgttcaaaaagtttaactgg
agatacttagttatagatgaagctcacaggataaaaaatgaaaaatctaagttgtcagaa
atagtgagggaattcaagactacaaatcgactgttgctaactgggactcctcttcagaac
aacttgcacgagctctggtcacttctaaattttctcttaccagatgtgtttaattcagct
gatgactttgattcctggtttgatacaaataattgccttggggatcaaaagcttgttgag
aggcttcatatggttttgcgtccatttctccttcgtcgaattaaagcggatgttgaaaag
agtttgcctccaaagaaagaagtaaaaatctatgtaggtcttagcaaaatgcaaagggaa
tggtatactcggattttaatgaaggatatagacatattaaactcagcagggaagatggac
aaaatgaggttattgaacattttgatgcagttgaggaaatgctgcaatcatccatatctc
tttgatggagctgaacctggtccaccttacacaacagatatgcatctagttaccaacagt
ggcaaaatggtggtgttagacaagctgctccctaaattaaaagaacaaggttcaagagta
ctaatcttcagtcagatgacaagggtattagacattttggaagattattgcatgtggaga
aattatgaatactgcagattggatgggcagacaccccatgatgagagacaagactccatc
aatgcatacaatgaaccaaatagcacaaagtttgttttcatgctaagcacacgtgctggt
ggtctgggtatcaatcttgcaactgctgatgtggtaattttatatgattcggattggaat
ccccaagtagatcttcaggctatggaccgagcacatagaattggacaaacgaagacggtc
cgagtgtttcgctttataaccgataacactgtagaagaaagaatagtagaacgtgccgag
atgaaactcagactggattcaatagtcattcaacaagggagacttgtagatcagaacctg
aacaaaattgggaaagatgaaatgcttcaaatgattcgacatggggccacacatgtgttt
gcgtcaaaagaaagtgaaatcactgatgaagatattgatggtattttggaaaggggtgca
aagaagactgcagagatgaatgaaaagctctccaagatgggtgagagctcacttagaaat
tttacaatggatacggagtcaagtgtttataactttgaaggagaagactacagagaaaaa
cagaagattgcattcacagagtggattgaaccacctaaacgagaaaggaaagccaattat
gctgttgacgcgtatttcagggaggctcttcgtgttagtgaacctaaagcacccaaggca
ccccgacctccaaaacaaccaaatgttcaggatttccagttctttcctccacgtttattt
gaattactggaaaaagaaattctgtattacaggaaaaccatcgggtacaaggtgcctcgg
agtcctgatctacctaacgcagcacaggcacagaaagaagaacaacttaaaattgatgaa
gcggagccccttaatgatgaggagctagaggaaaaagagaagcttctgacacaggggttt
actaattggaataagagagattttaaccagtttatcaaagctaatgagaagtggggtcgt
gatgatattgaaaatatagccagagaagtagaaggaaaaactccagaagaagtcattgaa
tactcagctgtgttctgggaaagatgtaatgaacttcaggacatagagaagattatggct
cagattgaaaggggagaggcaagaattcaaagaagaataagtatcaagaaagcactagat
acaaagattggacggtacaaagcaccctttcatcagctaagaatatcatacggtactaac
aaagggaaaaactacactgaagaagaggaccgttttctcatctgcatgctgcacaagctg
gggttcgataaggagaatgtgtatgatgagttacgccagtgcattcggaactcgccgcag
ttcagattcgattggtttctcaagtccagaactgcgatggagctccagaggagatgtaat
actttaattactttgattgaaagagaaaacatggaactagaagaaaaggagaaggcagag
aaaaagaaaagaggaccaaagccttcgacacagaagcgtaaaatggatggtgcccctgat
ggtagaggaaggaaaaagaagctgaaactatga
DBGET
integrated database retrieval system
