KEGG   Arvicola amphibius (Eurasian water vole): 119802302
Entry
119802302         CDS       T08327                                 
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
aamp  Arvicola amphibius (Eurasian water vole)
Pathway
aamp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:aamp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    119802302 (Taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aamp03021]
    119802302 (Taf5l)
   03036 Chromosome and associated proteins [BR:aamp03036]
    119802302 (Taf5l)
Transcription machinery [BR:aamp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     119802302 (Taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     119802302 (Taf5l)
Chromosome and associated proteins [BR:aamp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     119802302 (Taf5l)
    STAGA complex
     119802302 (Taf5l)
    TFTC complex
     119802302 (Taf5l)
    SAGA complex
     119802302 (Taf5l)
    SLIK complex
     119802302 (Taf5l)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd TFIID_NTD2 EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_RIG_2nd NBCH_WD40 Tricorn_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_Vps41 PEP5_VPS11_N WD40_RFWD3 Beta-prop_WDR19_1st PROPPIN Beta-prop_IP5PC_F WD_LRWD1 Ge1_WD40 Nbas_N WDR54
Other DBs
NCBI-GeneID: 119802302
NCBI-ProteinID: XP_038169206
LinkDB
Position
15:complement(49972082..49993910)
AA seq 589 aa
MKRGRTEQVQVAVSCYLKRRQYMDSEGPLKQGLRLSQTPEEMAANLTVQSESGCANAVSA
APCQAEPQQYEVQFGRLRSFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLQNASQKDIIEQLQTTQTIQDILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRSESSSLEPPDVPNPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHLVDTSRIHLACDTLEEEENEEDNTGTEMKILRGHCGPVYSTRFLADNSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLALSFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLVASASMDNSVRVWDIR
STSCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgagggcgcacggagcaggttcaggtggcagtgtcctgctacctcaaacgccgg
cagtacatggactcagaaggccccttgaagcaaggcctaagactatcacagactcctgag
gagatggcagccaacctcacagtccaatcagaatctggttgtgccaatgcagtgtctgca
gccccttgccaggcagaaccccagcaatatgaagtacagtttggacggctgagaagcttt
ctcactgattctgactcccagcacagtcatgaagttatgcctctcctctacccccttttt
gtctacctccacctcaacctggtccagagtggccccaaaagcacagtggaaagcttctat
agccgcttccatgggatgttcctacaaaatgcaagccagaaggacatcattgagcagctg
caaaccacacagaccatccaggacattctgtcaaacttccaacttcgtgcattcctggac
aataagtacgtggtccgtctccaggaagatagctacaactaccttatccgctacctccaa
agcgataacaacactgccctgtgcaaggtgcttgccgtgcacattcacctggacgtgcag
cctgccaagaggacagactaccagctgtatgccagtggtggctcctcgcgcagtgagagc
agcagcctggaaccaccagatgtgcccaaccctattctgcagaatgaggctgccctggaa
gtcttgcaggaaagtatcaagcgagtcaaggatggacctccttccctcaccaccatctgc
ttctatgccttttataacacagagcagctgctgaatactgcagagatctcctctgatagc
aaacttctggctgctggatttgacaattcctgcataaagctctggagcttgcggtccaaa
aagctgaaatcagagccccaccttgtggatacatctcgtatccatctagcctgtgacact
ttggaggaggaggagaatgaggaagacaatacgggcacagagatgaagatcctgcgtgga
cactgtggcccagtatacagcacacggttcctcgcagacaactcggggctgctctcttgt
tctgaagatatgtccatcaggtactgggacctggggagcttcaccaacactgtgctctat
cagggacatgcctaccctgtgtgggatgtggacatcagcccctacagcctgtattttgcc
agtgggtcccatgaccgtactgccaggctctggtcctttgatcggacgtacccgctgagg
atatatgcaggacacctggctgacgtggactgtgtcaaattccaccccaactcaaattac
ttggctacaggttccactgacaaaactgtccggctatggagtgcccagcagggcaactcg
gtgcggctcttcacggggcaccgaggtcccgtgctcgccctttccttctctcccaatggt
aagtacttggcgtccgctggtgaggaccagcggttaaagctgtgggacttggcctctggg
acactttttaaagaactgagaggccacacagacagtatcaccagtctggcctttagccca
gacagtggtctggttgcctctgcctccatggacaactctgtgcgtgtctgggacatcaga
agcacgtcctgcaacacacctgctgatggctcttcgggtgagcttgtgggtgtgtacact
ggacagatgagcaatgtcctgagtgtacagttcatggcctgcaacctcctcctggtgact
ggaatcacacaagagaatcaagaacattaa

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