Arvicola amphibius (Eurasian water vole): 119802546
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Entry
119802546 CDS
T08327
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119802546 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119802546 (Pcf11)
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119802546 (Pcf11)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119802546 (Pcf11)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119802546 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
119802546
NCBI-ProteinID:
XP_038169434
LinkDB
All DBs
Position
12:complement(160186372..160211854)
Genome browser
AA seq
1683 aa
AA seq
DB search
MSEPTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGPVV
SSPSISTPPIVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSGSSKLHVSQIPTMTVKTPHQVPVQSDKSRPGSSLQIQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTLNQSDIKTSKTIPSEKLNSSKQEKSKSSERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHPKDLKNQDSESMRLSDMNKRDPRLKKHLQDKTEGKDEDV
KEKRKTTEKKDKDEHMKSSEHRLMGSRNKIINGIVQKQDMVTEELDKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLGPKAGKMRQSGLKQSHMEEFPPSSR
EERNIKRSAKQDARDPRRLKKMDEERPQETASQHSMKSGAEPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRTPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPTEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDLFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERTRRLSPVSGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDGPTSRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPSKMI
FEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGFRFDGSPSLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGL
RFEGPHGQPVGSLRFENPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQ
QGVGMRFEGPHGQSVAGLRFEGHNQLSGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEG
PVPGGGMRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGP
QRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGNRFDNHPSQRLESVSFNQT
GPYNDPPGNAFNVPSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPLNRASGHYFEE
KNLQSSQFGNFGNLPTQMSSGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNP
SGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEAAAQPPPEEEEDQNED
QDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTE
KDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSV
PAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTP
SPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTENDTV
ESV
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagccgacgccggccgaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaacgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgttcc
acatgggatgaaatattccctttgaagaaactttacgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgccccctaatgtgaatacatctagcatccat
gtgaatccaaaatttttaaataaatcgcctgaggagtcttcaacacctggcccagtggtc
agctcccccagtatctccactcctccgattgtacctgaaatacaaaagaatcttacccaa
gaacaactaataaggcagcagttacttgcaaaacaaaaacagttattagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacagctggcagtatctctaagcgtt
cagcaagagacagccaacttgggtcctggatcaggatcatctaagttacatgtttcacag
attcccactatgactgttaaaactccccatcaggttccggtgcaatctgacaagagccgg
ccaggttcatccttacaaattcaagacttgaaaggaactaaccgggatcctcgtcttaac
aggatgagccaacattcatcccatggcaaagagcagagtcataggaaagaatttgtaatg
aacacattaaatcagtccgatattaaaacaagtaaaactataccctctgaaaaactaaat
tcctccaagcaagaaaaaagtaaatcaagtgaaagaataaccaagaaggaacttgaccag
ttagattctaaatctaaatcaaaatctaaatcaccttcacctttgaaaaacaaattatca
cacccgaaagacttgaaaaatcaagactctgaaagtatgaggttgtctgatatgaacaag
agagatccacgattaaaaaagcatcttcaggataaaactgaaggcaaagatgaggatgta
aaagaaaagagaaaaactacagaaaagaaggataaagatgagcacatgaaatcatctgaa
cacagactgatgggaagtagaaataaaatcataaatggcattgtccaaaaacaggacatg
gttacagaagaactggataaacaggggacaaaaccagggcgatcaagtactcgaaagaga
tccagatcaaggtcacctaagtctcggtcaccaattatacattccccaaagagaagagat
agacggtcacccaaacgaaggcaaagaagtatgtctccaactttgggccccaaagctgga
aagatgcgtcagtcaggacttaaacagtcacacatggaagagttcccaccgtcttcccga
gaagaaagaaatatcaagagaagtgctaagcaggatgctcgagatcccaggcgactgaaa
aagatggatgaggagcggccacaagaaacggcaagtcagcattctatgaagtcaggtgct
gagccaaaggagaatatcgagaattggcaaagctccaagtctgccaaaagatggaaatct
ggttgggaagaaaataaaagcttacagcagggtgatgaacatagtaaacctcctcatcta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgaacccccaagcag
caacatcgattaagtgttgatgccaatcttcagattcctaaagagttaacccttgcaagc
aaaagagaattacttcaaaagacgagtgaacgtttagcttctggtgaaattacacaggat
gagttccttgttgttgtacatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatctttttgactaccctttg
actgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagaacaagacgtctttct
cctgtatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgagcaagtctctgctaaaggtgtgcgagaggagcagagatctccattcaatgat
cgttttccacttaaacgacctagatacgaagattcagataaaccatttgtagatggccca
acatcaagatttgctggccttgatacaaatcagcgacttacagctttagctgaagaccgg
ccattatttgatggacctggtaggccatctgtgacgagagatggcccgagcaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctgcaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggtcctatgaggtttgaaggacca
caaggtcagttaggaggtgggtgccctttgagatttgaaggtcctccaggaccagtagga
acacctctgcggtttgaagggccaattggtcaaggaggaggaggtggctttcgatttgat
ggttcacctagtctgaggtttgagggatctgcaggtggtttgcgatttgaaggaccagga
ggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtaggtggtctg
aggtttgagggacctcatggacagcctgtgggcagtcttagatttgaaaatcctcgaggt
cagcctgtaggtggactcagatttgagggcggtcatggtccatcaggggctgcaattaga
tttgatgggcctcatggtcagccaggtggtggtatcagatttgagggccctttgctgcag
caaggagttggaatgaggtttgagggtccccatggtcagtctgtagctggtctgagattt
gaaggacataatcaacttagtgggaaccttaggtttgagggaccacatggtcagccgggg
gttggcatcaggtttgaaggacctttagttcaacaaggaggtggaatgaggtttgagggt
cctgtaccaggaggtggcatgagaattgaagggcctctgggtcaaggtggtcctagattc
gaaggttgtcactctttaaggtttgatggacagccaggtcagccatccctcttaccaaga
tttgatggattacatggccaaccaggtcctagatttgaaagaactggtcagccaggtcca
cagagatttgatgggccacctggacagcaggttcaaccaaggtttgatggtgtacctcaa
agatttgatgggccacaacaccagcaagcatcaagatttgatatccctcttggtctgcaa
ggcaaccgatttgacaatcatccttcacaaaggcttgaatcggtatctttcaatcagact
ggcccatataatgatccacctggcaatgcttttaatgttccatctcaaggattacagttc
caaagacatgagcaaatatttgatacacctcaaggaccaaattttaatggacctcatggc
cctggaaaccagaatttcccaaatcctcttaacagagcttcgggacactattttgaggaa
aagaatcttcagagttctcagtttggaaactttggaaatttacctactcagatgtcatca
ggaaatatccaggcatctcaacaggttctgactggtgttgctcagccagtagcgtttggc
caaggacaacaatttttaccagttcatccacagaatcctggagcttttattcaaaatcct
tcaggtctgcctaaggcatatcctgataatcatctcagtcaggtggatgtaaatgaattg
ttttcaaaactactaaaaacaggaattctcaaattgtcacagcctgattcagccacaaca
caggtaaatgaggctgcggctcaacctcctcctgaagaagaggaggatcagaatgaagat
caggatgttccagatcttactaatttcacaattgaggaattgaaacaacgttatgacagt
gttataaaccggctatacactggaattcagtgttactcttgtggaatgaggtttacgacg
tcccagacagatgtttatgcagatcacttggactggcattatcggcaaaatagaactgag
aaagatgttagcagaaaagtcactcacagacgttggtactacagtttaacagactggata
gaatttgaagaaatagctgatctggaagaacgtgcaaaaagccagttttttgaaaaggtt
catgaagaggttgttcttaaaactcaggaggcagctaaagaaaaggagttccagagtgta
cctgctggaccagctggagcagttgagagttgtgaaatttgtcaagaacagtttgaacaa
tactgggatgaagaggaggaagaatggcacttaaaaaatgctattagagtagacggaaag
atttaccatccatcgtgttatgaagattatcaaaatacatcttcttttgattgtacacca
tctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaaaat
gaattacaagaaccctgtgaaagccccaaagttaaggaagagcaaattgatgccccacca
gcttgctcagaagaaagtgtagcaacacccactgaaattaaaacagaaaatgatacagtt
gagtcagtttaa
DBGET
integrated database retrieval system
