Arvicola amphibius (Eurasian water vole): 119803659
Help
Entry
119803659 CDS
T08327
Symbol
Cpsf6
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03015
mRNA surveillance pathway
aamp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119803659 (Cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119803659 (Cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119803659 (Cpsf6)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
119803659 (Cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
119803659
NCBI-ProteinID:
XP_041910182
LinkDB
All DBs
Position
17:42411546..42453277
Genome browser
AA seq
677 aa
AA seq
DB search
MGVSEGGGEKEKRWNKTSMLTQRKCEFGDVSGFGDVSEFGDVSGFGDVSGFGDVSGFGDS
EFGDVSEFDDVIDFMTQPKDQLGHYAENYIRTVCPHKTTIFSGLIPDGCTSKTVLGGETG
GGGGEMGGGRETAFSTLTLQSQGGQKYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTXP
PTVGDDVGKGAAPNVVYTYTGKRIALYIGNLHGXWTTDEDLTEAVHSLGVNDILEIKFFE
NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQ
SGKCLGEGKAGPPGGSSNVQAFPQXGRGRGRFPGLIPGGDRFPGPAGPGGAPPPFPAGQT
PPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPG
PPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP
HVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGREIDTARTPLSEAEFE
EIMNRNRAISSSAISRAVSDASAGDXGSAIETLVTAISLLNSPKYLQDDRCKVLISSLQD
CLHGIESKSYGSGSRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSTERERHRDR
DRDRDRERDREREYRHR
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgggggtgtcagaaggagggggagagaaggaaaagagatggaacaaaaccagcatgctc
acccagaggaaatgtgagtttggtgatgtcagtgggtttggtgatgtcagtgagtttggt
gatgtcagtgggtttggtgatgtcagtgggtttggtgatgtcagtgggtttggtgatagt
gagtttggtgatgtcagtgagtttgatgatgtcattgacttcatgactcagcccaaagat
cagcttggacattatgcagagaattatataagaactgtctgtccccacaagaccacaatc
ttctcaggcctaatacctgatggctgcacaagcaagacagttctaggtggtgagacaggg
ggcgggggtggagaaatgggaggagggagggaaactgccttttctacattgacacttcag
agccaaggagggcagaaatatggtggacatgatcagatagatttgtacgatgatgtcatc
tctccgtctgcaaataatggcgatgccccagaagaccgggactacatggatactnctcca
ccgactgttggtgatgatgtggggaaaggagcagcaccaaacgttgtctatacgtacact
ggaaagagaattgcattatatattggaaatctacatgggtagtggacaacagatgaggac
ttaactgaagcagttcattctttgggagtaaatgatattttggagataaaattttttgag
aatcgggcaaatggacaatcaaaaggatttgcccttgttggtgttggatctgaagcatct
tccaaaaagttaatggatctgttgcctaaaagagaacttcatggtcagaatcctgtcgtg
actccgtgcaataagcagttcctgagtcagtttgagatgcagtccaggaaaactacacaa
tcaggaaaatgtctgggggaaggtaaagctggtcctccaggaggcagttcaaacgtgcag
gcatttccacaangtggtagaggacggggccgttttcccgggctgattcccggtggggac
agatttcctgggccagcaggaccaggaggggcccctccacctttcccagccggacagact
ccaccacgtccaccattgggtcctccaggcccacctggtccaccaggtcctccacctcct
ggtcaggtcctgccacctcctctggcaggacctcccaatcgaggagaccgccctccacca
ccagttctttttcctggacaaccttttgggcaacctccgttgggtccacttcctcctggg
ccgccgcctccagttccaggctacggccctcctcctggcccaccgcctccacagcaggga
ccgcctccacctccaggcccctttccacctcgaccaccaggtccacttgggcctcccctc
acacttgctcctcctccacaccttccgggaccacctccaggtgccccaccaccagctcca
catgtgaatcctgcttttttccctccaccaactaatagtggcatgccaacgtcggatagt
cgtgggccaccgcccacagacccctatggcagacctccaccctacgataggggtgactat
ggtcctcctgggagggaaatagatactgcaagaactccattgagtgaagctgagtttgaa
gaaatcatgaatagaaatcgggccatctcaagcagtgctatttcaagagctgtgtctgat
gccagtgctggtgattaggggagtgctattgaaacattggtaacagcaatttctttatta
aacagtccaaagtatctgcaagatgatcgttgcaaagttcttattagttctttgcaagat
tgccttcatggaattgagtccaagtcctatggctctggatcaagaagacgtgaacgatca
agagaaagggaccatagtagatcgcgggaaaagagtcggcgtcataaatctcggagtaga
gatcgtcatgatgattattacagagagagaagcacagagagggagagacacagggatcgg
gatagggaccgtgaccgggagcgtgaccgagagcgagaataccgtcatcgttag
DBGET
integrated database retrieval system
