Arvicola amphibius (Eurasian water vole): 119803965
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Entry
119803965 CDS
T08327
Symbol
Pms1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119803965 (Pms1)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
119803965 (Pms1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
119803965
NCBI-ProteinID:
XP_038171413
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All DBs
Position
18:23645405..23724902
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AA seq
926 aa
AA seq
DB search
MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSIDVKLENYGFDKIEVRDNGEG
IKAVDVPVMAVKYYTSKINSHEDLESLTTYGFRGEALGSICSVAEVVVTTRTAADDFSTQ
YVLDGSGHILSQKPSHLGQGTTVTALKLFKNLPVRKQFYSTAKKCKDELKHVQDLLISYA
VLIPDLRIIFIHNKAVIWHKSRVPDHRTALMSVLGTAAMANFDAVQHHCEESQIYLSGFF
PKLDADHNSTSLSSPERSFIFINSRPVHQKEILKLIRRYYNLRCLKESARSYPIFFLKID
VPSAELDVNLTPDKSQVLLQNKEAVLNALENLMVTCYGPLPSTESCGNNHVAISAANMAA
RETAETDVPVNKMESPGNNYPNADTSAVHFQNDESRKNTANYLNQQINVNEHCDGHFSSE
HLHINKDTGSPFQSVSMDSSSSEAVQSKYSKTDSAGSGEHIQGEDGRNGTEECGGGGGEA
FLEKSLEISADDWSKGNVLNAMGENIEPVRTLVPQKSLACKVSDDSYSAPEPRNLSDGPG
SKSSNVIDNKSGQLTAYDLISNRAVKKPMAARALFTQDRRAQFLAENPKTSLEDAAAQIE
ALWETLSEEEKLKYEEKAKKDLERYNNQMRRAIEQEPQVSFKDGRKKIRATSAWGLAQKQ
KLKASLSNQPKLDELFQSQKEKRRSESFKIVEVPFSMESIKENFKKQKEVDLEEKDEICL
IHSLKFPDAWLVTSRRDVMLLNPYRVEEALLFKRLLENHKLPAEPLEKPIILTESLFNGS
HYLEVLHKMSTVDQRCGGSTYLSDPRLTANGFKIRLIPGVSSTENYLEIEGMAKCLPFYG
VMDLKEILNAIIDRNAKEPSECRPRKVTSYLEGEAVRLSRQLPMYLPREDIQELIYRMKQ
QFGNETKECVHGRPFFHHLTHLPESS
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagttgcctgcggcgacagttcgcctcctgtccagttcccagataatcacatca
gtggtcagtgttgtgaaagaactcatcgaaaactccttggacgctggagccaccagcatc
gacgtgaaactggagaactacgggtttgacaaaatcgaggtccgggacaatggcgagggc
atcaaggctgtggacgtccctgtaatggccgtgaagtactacacctccaagataaacagt
cacgaagacctcgagagcctgacaacctacggtttccgtggtgaagccttggggtcgatt
tgtagtgttgcggaggtggtagtcacaacaaggacagctgctgatgactttagcacccaa
tatgttctagatggcagtggccacatactttctcagaagccctcacatcttggtcaaggt
actactgtaactgccctgaagttgtttaagaatctgcctgtaaggaagcagttctactca
actgctaaaaagtgtaaagacgaactcaaacatgtacaggatctcctcataagctatgct
gtccttatccctgacctaaggattatttttatacacaataaggcagttatttggcataag
agtcgagtaccggatcacaggacagctctcatgtcggtcctggggactgctgcgatggcc
aactttgacgctgttcagcaccactgtgaagaatctcagatttacctaagtggattcttc
ccaaaacttgatgcagaccacaattccacaagtctttcaagcccggagagaagttttatc
tttattaacagtcgaccagtacatcagaaagagatactgaagctgatccggcgttattat
aacctgaggtgcctgaaggagtctgctcggtcgtatcccattttctttctgaaaattgac
gttccttcagctgaactggatgtaaatctcacaccagataaaagtcaagtattattacag
aataaggaagctgttttaaatgctcttgaaaatctgatggtaacctgttacggaccgcta
cccagtacagagtcttgtggaaataaccacgtagctatttccgcagccaatatggctgct
cgtgagacagcagaaacagatgtgcccgtgaataaaatggagtcacctggaaataattac
ccaaatgctgacacttcggctgtccacttccaaaatgatgaatctagaaaaaacactgct
aattatttaaatcaacagataaatgtaaacgagcactgtgatggtcattttagtagtgaa
catcttcacattaataaggacactggaagtccttttcagagtgtctccatggatagttcc
tcctcagaggctgtccagagtaaatacagcaagactgactctgcaggttccggtgaacat
atccaaggagaagatggcaggaatgggacagaagaatgtggcggaggtgggggagaagca
tttctcgaaaaatctctggaaatcagtgccgatgactggagcaagggaaatgtgttgaat
gcgatgggagagaatattgaacctgtgagaactttagtgccacagaaaagtctagcatgt
aaagttagcgatgatagttactcagcccctgaaccgaggaatctcagtgatggccctggt
agcaaatcatccaatgtaatagataacaaatccggacagcttacagcctatgacttaatt
agcaaccgagcagtcaagaagcccatggcagcgagggccttgtttactcaagatcgtcgg
gctcagttcctcgcagaaaatcccaagacttctttggaggatgcagcggcacaaattgaa
gcactgtgggagactctgagtgaagaggagaaactgaagtatgaagaaaaggctaaaaaa
gacttggaacgatacaataaccaaatgcggagagctattgaacaggagccacaagtatcc
tttaaagatggcaggaaaaagataagagccaccagtgcatggggcttggcacagaagcag
aagctgaaagcctcgctatctaatcagcccaaactcgatgagctctttcagtcccagaag
gagaaaaggaggagtgagagctttaaaatagtggaggtccccttttctatggagagcata
aaagagaactttaagaaacaaaaggaagttgacttagaagagaaggatgagatttgcctg
atccacagtctcaagtttcctgatgcgtggctggtcacgtcccgaagagatgtcatgtta
ctgaacccatacagagtggaggaagccctgctgtttaaaagacttcttgagaatcataaa
ctccccgcagagccactggaaaagccaatcatattaacagagagtctttttaatgggtct
cattatttagaggttttacataaaatgtcgacagttgaccagagatgcggcggatcaact
tacctgagtgaccctcgtctgacagcaaatggcttcaagatcaggctgataccaggagtt
tccagtactgaaaactacttggaaatagaaggcatggctaagtgtctcccgttctacgga
gtaatggatttaaaggaaattcttaatgccataatagacaggaatgcaaaggagccttct
gagtgcagaccccggaaggtgacgagctatctggagggggaagcagtccgtctctcaaga
cagctacccatgtacttaccaagagaagacatccaagagcttatctacaggatgaagcag
cagtttggaaatgaaactaaagagtgtgttcatggccgcccattttttcatcatttaacc
catcttccagaaagttcatga
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