Arvicola amphibius (Eurasian water vole): 119804378
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Entry
119804378 CDS
T08327
Symbol
Col4a6
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04382
Cornified envelope formation
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04820
Cytoskeleton in muscle cells
aamp04926
Relaxin signaling pathway
aamp04933
AGE-RAGE signaling pathway in diabetic complications
aamp04974
Protein digestion and absorption
aamp05146
Amoebiasis
aamp05165
Human papillomavirus infection
aamp05200
Pathways in cancer
aamp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119804378 (Col4a6)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119804378 (Col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119804378 (Col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119804378 (Col4a6)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
119804378 (Col4a6)
09154 Digestive system
04974 Protein digestion and absorption
119804378 (Col4a6)
09158 Development and regeneration
04382 Cornified envelope formation
119804378 (Col4a6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
119804378 (Col4a6)
09162 Cancer: specific types
05222 Small cell lung cancer
119804378 (Col4a6)
09172 Infectious disease: viral
05165 Human papillomavirus infection
119804378 (Col4a6)
09174 Infectious disease: parasitic
05146 Amoebiasis
119804378 (Col4a6)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
119804378 (Col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aamp04147
]
119804378 (Col4a6)
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119804378 (Col4a6)
Exosome [BR:
aamp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119804378 (Col4a6)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119804378 (Col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119804378
NCBI-ProteinID:
XP_041910277
LinkDB
All DBs
Position
X:complement(92141267..92209944)
Genome browser
AA seq
1667 aa
AA seq
DB search
MSIGEFEEQIVFQKVASLWGRPGPIGTQGPAGPQGFAGPTGLSGLKGERGSPGPLGPYGS
KGDKGPMGIPGFVGINGIPGHPGQPGPRGPPGLDGCNGTQGTDGFPGPDGYPGILGPPGL
PGLKGSKGEPAAFQDSVIGMKGVPGLPGLDGIAGPSGYPGSPGDAGPIGPPGLQGPPGPA
GLPGPDGNMGLGFQGEKGVKGDVGLPGPAGPPPSTGELEFMGFPKGKKGSKGEPGPQGFP
GMSGPPGFPEFGSIGEKGERGILGLPGPRGPMGSEGEQGHPGRQGKKGTSGFPGINGVPG
IKGEKGGVGLRGPDIFTNPDGAVTSGYPGDPGVPGLQGPRGDEGMQGQRGPSGTPGLPSL
TGLPGALGPQGIPGLKGDHGNPGRTTFGDAGLPGRIGLPGLPGLPGPSGPPGRTFETGPL
PSIEFGFPGLRGEQGPKGHQGLKGIKGDSGFCACEGGAPNIGPNGEPGLPGTQGLIGLPG
IKGVRGDPGSRGASGPAGAPGLFGSRGHTGLKGKKGEPTISRGSKLSGDKGDPGPQGTPG
MAGAPGKDGIPGLPGLPGIQGDSGSGFPGEKGSPGLPGIKGIDGPTGPPGIGLPGASGAP
RTSWRXGIDGLPGHQGLKGAWGVTLPCVIPGSYGPSGFPGAPGFPGSKGARGLPGIPGKP
GTHGSKGEPGSPGLIHLPGLSGFPGTRGEKGLPGFPGLPGKDGLPGKAGSPGLPGSKGAT
GDIFGAENGASGEQGLQGLPGDKGFPGDSGLPGPMGLTGKSGMQGPKGERGNPGXSGPPG
EPGPSGSSDAFGVKGTSGLQGGTRLSCTSGSLERRAQRGYIGSTWVKRGKRGSSPGVKGL
PCFSQGFSWFPGKAPGLPGVTGLPGIPGQKGEKGSSGPAGFPGLPGLPGIPWKADGYKGS
SGLFGKVGQPGQAGTPGNEKGDRGDPGSVGATSPRPPMLNLWFKGEKGSRGSAGSIGFPG
PRGEKGESGIPGLPGPPGAPGQSSIIKGLSGSQGSPGSVGRSGLPGLKGSLGITGFPGMP
GKSGSQGRTGTSGPLGATGIPGLKGDQGQTFGISGSPGPKGQPGELGFKGVKGKDGLVGD
RGYPGNKGDDGKVGIAGDPGLPGSPGLQGISGMRGDPGLPGSPGHLGSIGHPGPTGLIGP
KGFSGPPGLHGLNGLPGTKGTHGTPGGSITGVPGPAGLPGPKGEKGIPGIVIGDPGKQGS
RGKKGDRGFPGLQGPAGPPGAPGISLPSVIAGQPGDPGRPGLDGERGRPGLPGPPGPPGP
SSDQGDTGDPGFPGIPGLQGLKGNQGLPGFSGLSGDLGLKGVKGEPGLMGTPGKIGPPGD
PGFPGMKGKAGPRGFPGPQGVPGHTPISEAIQAPPGPLGLPGIDGIPGLTGDPGPQGSVG
PQGSKGLPGIPGKDGPSGLPGSPGILGDPGLPGLQGPPGFEGAPGQQGPFGRPGMPGHSV
QVGYTLVKHSQSEQVPLCPVGMSRLWVGYSLLFVEGQEKAHNQDLGFAGSCLPRFSTMPF
IYCNINEVCHYARRNDKSYWLSTTAPIPMMPVGQSQIPQYISRCSVCEAPSQAIAVHSQD
VTIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCH
YFANKYSFWLTAVEERRQFREEPVSETLKTGQLHTRVSRCQVCMKHL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgagcataggagagtttgaggagcagatagtgttccagaaagttgcatctctttgggga
cgccctggaccaattggaactcaaggtccagcaggtcctcaaggatttgctggtcccact
ggtttatcagggttgaaaggagaaagaggctcgccgggccctctgggaccatatggatca
aaaggagataagggtcccatgggaattcctggctttgttggcatcaatgggattccgggt
caccctggacaaccaggtcccagaggtccacctggactagatggctgtaatggaactcaa
ggaactgatggatttccaggccctgatggctaccctgggattttaggaccacccgggctt
cctggtctcaaaggttcaaaaggagaacctgctgcttttcaagacagcgtcataggaatg
aagggggttcctgggctgcctggactggatggaattgctggtccatcaggatacccagga
tctcctggagatgcaggacccataggaccaccaggcttacaaggtcccccaggccctgct
ggacttcctggtccagatggaaatatggggttaggtttccaaggagaaaaaggagtcaag
ggggacgtcggcctccctggccctgcaggaccacctccatctactggggaactagaattc
atgggtttccccaaagggaagaaaggctccaagggtgaaccagggcctcaggggttccca
ggcatgagtggccctccagggttcccggagtttggatctattggagagaaaggagaaagg
ggaatccttggtttgccaggacctaggggtcccatgggttccgaaggagaacaaggacat
ccggggagacagggaaagaaggggacttccggttttccagggattaacggggtcccagga
attaagggtgaaaagggtggcgttggtctgcgaggcccagacattttcaccaatccagat
ggtgctgtgacctcaggttatcctggagaccctggtgtgccaggcctccagggccctaga
ggagatgaaggcatgcaaggccaacgtggcccttctggcacccctggcctcccatcgtta
acaggtcttccaggtgccctagggcctcagggaattccaggcctgaaaggagaccatgga
aacccagggcgcactacctttggggacgcgggcctgcctggcagaattggtttgccaggt
ttaccaggcttaccaggcccctcaggcccacctggtcgcacatttgagactggacccttg
cctagcatagagtttgggttccccggtctccgaggagaacaaggtccaaaaggacatcag
ggcctcaagggaataaaaggagactctgggttttgtgcttgcgaaggtggtgcgcccaac
attggaccaaatggggaaccaggcctgcctgggacacaaggtctcatcggcctcccgggt
attaaaggggttagaggagatccaggctctcggggtgcatctggcccagctggggctcca
gggttatttggatctagaggccatacaggcctcaaaggaaagaaaggagaaccaaccatc
agtagaggatcaaaactgtcaggagacaaaggtgaccctggtccccaggggaccccaggt
atggcaggagctccaggcaaggatggaataccaggtttaccaggcctcccaggcattcag
ggagacagtggatctggcttcccaggtgaaaaggggtcaccaggacttcctggtataaag
ggcattgatggtccaactggaccaccaggaattgggctgccgggggcttccggggcccca
cggacttcctggagataaggaatagatgggttaccagggcaccagggactgaaaggagca
tggggagtcaccttgccttgtgttattcctggatcatatggtccgtcgggatttcctgga
gctcctggattcccaggctctaaaggagctcggggcctccctggaattccaggcaagcct
ggcactcatggaagtaaaggagagcccggaagtccggggttaattcatctcccaggattg
tcaggatttcctggaacccgtggggagaagggattgcctgggtttcctgggcttcctgga
aaagatggcctgcctgggaaggctggcagtccaggtttaccaggttccaagggagccact
ggtgacatctttggtgctgaaaatggtgcttcgggggagcaaggactacagggattgcca
ggggacaaaggatttcctggagactctggccttccggggcccatgggtttgactgggaag
tctggtatgcaaggccccaaaggtgagaggggcaaccctggancatcaggaccaccagga
gagccaggaccctcagggtctagtgatgcatttggcgtcaagggcacatctggactccaa
ggaggcaccaggctttcctgcacatcaggtagcctggaaagaagggcccaaagaggatac
ataggttcaacctgggtcaaacgcggaaaacgagggtctagccccggcgtaaaaggcctt
ccctgtttctcacaagggttcagctggtttcctgggaaggccccggggttgccaggagtc
actgggttgccaggcatcccaggccaaaagggtgaaaaggggtcctctgggccagcaggg
tttcctggcttacctggccttccgggtattccatggaaggctgatggatataagggatct
tccggtttatttggaaaggtgggacaacctggacaagctggtactcccggtaatgaaaaa
ggagacagaggggatccagggtcagttggtgcaaccagtccaagacctccaatgctgaac
ctttggttcaaaggagaaaaaggctctcgaggttctgctggatcaattggatttcctggg
cccagaggtgaaaaaggagagtctggcatcccagggttaccaggtccacctggagctcct
ggacagtccagtatcatcaaaggactcagtgggagtcaaggttcccctggatctgtggga
agaagcggattacctggcctgaaggggtccctggggatcacaggtttcccaggaatgcca
ggaaaaagtggttcacagggtcgcactggaacttctggcccactgggagcaactggtatc
ccaggtttaaaaggagatcaaggccaaacatttggcatttctggaagccctggacccaag
ggacagcctggtgaattaggttttaaaggtgttaaaggaaaagatgggctagttggtgac
agaggttacccaggaaacaaaggcgatgatggaaaagttggtattgctggagatcctggc
cttcctggatccccaggacttcaagggatttcaggtatgagaggagacccaggcctccca
ggttcccctggccatctggggtcaattggccaccctggacccactggcttaataggacct
aaaggattctctggacctcctggtttacatggactgaatggacttccaggcaccaagggt
acccatggcactccaggaggcagcatcaccggtgttcctgggcctgctggcctgcctggt
cccaaaggggaaaagggaataccaggaattgtcattggagatccaggaaaacaaggttca
agggggaaaaaaggtgatcgaggtttcccaggtctccaaggtcctgctggtccccccgga
gccccaggcatctccttgccctcagtcatagcaggacagcctggtgaccccgggcggcca
ggcctagatggagaacgaggccgcccaggccttccaggacctccaggtccccctggcccc
tcttcagaccaaggtgacactggagaccctggcttccctggaattccaggccttcaaggg
ctcaagggaaaccaaggacttccaggtttctctggcctctctggagacctagggctgaaa
ggcgtgaaaggagagcctggcctcatggggactcctggcaagattgggccaccaggagac
ccaggatttcctgggatgaaggggaaggcagggccaagaggctttccaggcccccagggt
gtgccaggacacacaccaatttccgaagctattcaggctcctccaggacctttgggtctt
ccaggcattgatggtatccctggcctcacaggagaccctgggcctcaaggctctgtgggt
ccacaaggttctaaaggtctacctggcatccctggcaaggatggacccagtgggcttcca
ggctcacctggaattctaggtgatcctggtctccctggactacaaggacctccgggattt
gaaggcgctccggggcagcagggtccctttgggaggcctgggatgccagggcacagtgtg
caagtgggctacacactggtcaaacacagtcagtcagaacaggtgccgctatgccccgtc
gggatgagccggctgtgggtgggttacagcttactgttcgtggaggggcaggagaaagcc
cataaccaggacctggggtttgctggctcctgcctgccccggttcagcaccatgccattc
atctactgcaacatcaatgaagtgtgccactatgccaggcgcaacgataaatcctactgg
ctctccacgactgcccccattcccatgatgcctgtgggtcagagccagattccccagtac
atcagccgctgctctgtttgtgaggcaccctcgcaagccattgctgtgcacagccaagac
gtcaccatcccacagtgccctttgggctggcgcagcctctggatcggttactccttcctc
atgcacacagctgccggggctgaaggcggaggccagtctctcgtctctcctggctcctgc
cttgaggatttccgggccactcctttcattgagtgcagcggtgcccgtggcacctgccac
tactttgccaacaagtacagtttctggctgactgcagtggaggagagacggcagtttcgg
gaagagcctgtttcagagacattgaaaaccgggcagctccacaccagggtgagccgctgc
caggtgtgcatgaaacacctgtag
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