Arvicola amphibius (Eurasian water vole): 119804820
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Entry
119804820 CDS
T08327
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119804820 (Upf3b)
03015 mRNA surveillance pathway
119804820 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119804820 (Upf3b)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119804820 (Upf3b)
mRNA cycle factors
P-body specific factors
119804820 (Upf3b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
119804820
NCBI-ProteinID:
XP_038172472
LinkDB
All DBs
Position
X
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AA seq
483 aa
AA seq
DB search
MKEEKDHRPKEKRVTLLTPQGATGSSAGATAEGAKGEDKQDRSRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERVPEREKIKDEPKIKVHRFLLQAVNQKNLLKKPEKGDEKELDKRDK
AKKMDKENLNEERACGQSCTLPRRFDVDLKDEKPKRLDDENVRDYRDRDYERDQERMIRE
RERIKRQEEERRRQQQKERYEKEKAFKRKEEELKREKEALRDKGKKSENTESICTLEKAE
KKEEVVKRDRIRNKDRPAMQLYQPGARSRNRLCPPDDNIKSGDSPVDRKQESGISHRKEG
GEE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaaagatcacaggcctaaggagaagcgagtgaccctcttaacgcctcag
ggtgccacgggcagcagcgctggtgctactgccgaaggcgccaaaggggaagataagcag
gatcgcagcagggacaagaaagaagctttaagcaaggtggtaattcgaagattacctccc
actttgaccaaggagcagcttcaggaacatcttcaacctatgcctgagcatgattatttt
gagtttttttccaatgatactagtctgtatcctcatatgtatgccagagcctatatcaac
tttaaaaaccaagaggacattattttattcagggaccgatttgatggctatgtattcctt
gacaataaaggtcaggaatatcatgctatagtagaatttgcaccttttcaaaaagctgca
aaaaagaagattaagaaaagagatacaaaagttgggactatcgatgatgatccagaatac
agaaaatttttggagagttatgccacagacaatgaaaaaatgacgtctactccagagaca
ttgctggaggaaatagaagccaaaaatcgagaattaatagctaaaaggacaaccccactt
ttgagcttcctgaagaacaaacagcgaatgagagaagaaaagagggaagaaaggaggaga
cgagaaatagaaaggaaaagacaacgagaggaagaaagaagaaaatggaaagaagaggag
aaacgaaaaaggaaagatatagaaaagctaaagaagatagagagagttccagaaagggaa
aaaataaaggatgaaccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaagaaaccggaaaaaggagatgaaaaagaacttgataaaagagacaaa
gccaagaaaatggacaaagagaatctgaatgaagaaagagcctgtgggcaaagttgtact
ctgcccaggcgttttgatgttgacctaaaggatgaaaagccaaagaggcttgatgatgag
aatgtcagagattacagggatcgggattacgaaagagatcaggagcgcatgattcgagaa
agagagaggataaagcggcaagaagaagaacgccggaggcagcagcagaaggagcgctat
gagaaagaaaaggctttcaaacgaaaggaagaggaactgaagagagaaaaagaagcactt
cgagataaagggaagaagagtgagaatacagaatcaatatgcaccttggaaaaagctgaa
aagaaagaggaagtggttaagagagaccgcataaggaacaaggatcgtccagcaatgcag
ctgtaccaaccaggagcccgaagccgaaatcgactctgtccccctgatgacaacatcaag
tctggcgattccccagtggacagaaaacaggaaagtggtattagccatagaaaagaagga
ggagaggagtga
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