Arvicola amphibius (Eurasian water vole): 119805961
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Entry
119805961 CDS
T08327
Symbol
Rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03030
DNA replication
aamp03410
Base excision repair
aamp03420
Nucleotide excision repair
aamp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119805961 (Rfc1)
03410 Base excision repair
119805961 (Rfc1)
03420 Nucleotide excision repair
119805961 (Rfc1)
03430 Mismatch repair
119805961 (Rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamp03032
]
119805961 (Rfc1)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119805961 (Rfc1)
DNA replication proteins [BR:
aamp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
119805961 (Rfc1)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
119805961 (Rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
BRCT_2
RuvB_N
AAA_22
Rad17
AAA_14
AAA_5
AAA_17
AAA_33
AAA_16
AAA_7
AAA_30
Zeta_toxin
nSTAND3
AAA_18
RNA_helicase
NTPase_1
NPHP3_N
AAA_28
AAA_19
Motif
Other DBs
NCBI-GeneID:
119805961
NCBI-ProteinID:
XP_038173659
LinkDB
All DBs
Position
1:37258137..37332037
Genome browser
AA seq
1145 aa
AA seq
DB search
MDIRKFFGVISSGKKPVSETVKKNEKIKPSAGTVKGKKGVKEVKVNNSCKEDASKPKQNN
KKKRIIYDSDSDSEETVQVKNAKKKSEKLPLPSKPGKISRKDPVTYVSETDEDDDFVCKK
ATSKAKENGVSTNSYLGASNMKKNEENTKTKNKPLSPIKLTPTSVLDYFGTESVQRSSKK
MVASKRRESSQNMDDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPKTKM
ARKDPEEGESLSPLQADRSKAENHKSPNKAGHFLIKTRSPAKPSKGGSSKGSEQPRSSSA
HQREAGPSPKASSKLALMKAKEESSYKDTEPMASKRKENAIELRGEKQTPKKTKSSPAKK
ESVSPEDSEKKRTNYQAYRSFLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESIERE
EAKSLIERYGGKVTGNVSKKTNYLIMGRDSGQSKSDKAAALGTKILDEDGLLDLIRTMPG
KKSKYEIAAEAEMKKEKSKLGQTPQKNDQGKRKISPNKKESESKKSKLTPQKCSPAKAMK
KEADVFQRALDFTEQEVKETSGHSRAQGLAGDSGGDKVESLLWVDKYKPTSLKHIIGQQG
DQSCANKLLRWLRNWHKSSPEEKKHAAKFGKLSSKDDGSSFKAALLSGPPGVGKTTTASL
VCQELGYSYVELNASDTRSKNSLKAVVAESLNNTSIKGFYTSGAAPSVGSKHALIMDEVD
GMAGSEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQIKSA
MLSIAFKEGLKIPPPAMNEIILGANQDVRQVLHNMSMWCAQSKALTYDQAKADSQRAKKD
IKLGPFDVARKVFAAGEETAHMSLMDKSDLFFHDYSIAPLFVQENYVHVKPVAAGGDMKK
HLMLLSRAADSICDGDLVDSQIRSKQSWSLLPTQAIYASVLPGELMRGYMTQFPSFPSWL
GKHSSTGKHDRIVQDLALHMSLRTYSSKRTVNMDYLSHIRDALVRPLTSQGVEGVQHVVT
LMDTYYLMREDFENIMEVSSWGGKPSPFSKLDPKVKAAFTRAYNKEVHLTPYSLQAVKTS
RLSTGPALDSEYHEESQEDDSQSDEKEQDAIETDAMIKKKTGSSKSSKPDKDKESKKGKG
RSWKK
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atggacattcggaaattctttggggttatatcaagtgggaaaaagcctgtaagtgagacg
gtaaagaagaatgagaaaataaaaccttcggcgggaactgtcaaaggaaagaaaggagta
aaggaagtcaaggttaataattcctgtaaagaggatgcctccaaaccgaagcagaacaac
aagaaaaagaggatcatctatgattcagattcagattcagaggagacagtgcaggtaaaa
aatgctaaaaagaaatcagaaaaattgccactgccttctaaacctggtaaaatttctcgg
aaagatcccgttacttacgtttctgagacagatgaagacgatgactttgtatgtaaaaag
gcaacctccaaagcaaaagagaatggagtatctacaaacagttaccttggagcatcaaac
atgaaaaagaatgaagaaaacaccaagactaagaataaacctttatcaccaataaaactt
acaccaacatcagtgctcgattattttggaactgaaagtgtccagagatccagtaagaag
atggtggcgagcaaaagaagagagtcttctcaaaacatggacgattccagattgaatgat
gaggccatcgccaagcagttgcagcttgacgaagacgcagagctggagaggcagttgcat
gaagatgaagagtttgctcgaacattagccatgttggatgaagaacccaagaccaaaatg
gcccgaaaggaccctgaagagggagagtcattatcacctctccaagctgatcgaagcaaa
gcagaaaaccataagagccctaataaagcagggcatttcttaataaagacccgcagtcct
gctaagcccagtaagggtgggagctccaaaggatctgagcagccccgcagctcatcagct
catcagagggaagccggtccctctcccaaggccagttccaagctggcacttatgaaagca
aaagaagaaagttcttataaagacacagagccgatggcctcaaaaagaaaagaaaatgcc
attgaactcagaggagagaaacaaactcctaagaaaaccaaaagttccccagctaaaaaa
gagtctgtaagtccagaagattctgaaaagaagcgcactaattatcaagcttatcgaagc
ttcttaaatcgtgaaggtcccaaagctctgggctccaaagaaatacccaagggagctgaa
aattgcttggaaggcctgacatttgtgatcacgggtgtgctggagtccattgaacgggaa
gaagccaagtctctaattgaacgttatggggggaaagtaacaggaaatgtgagcaagaaa
accaactatctcatcatgggccgggacagcggacagtccaagagtgacaaggcagcagct
ctgggaacaaaaatccttgatgaagatggtttgttggatctgattcgaactatgccaggc
aagaaatccaagtatgaaatagctgctgaagctgagatgaagaaagaaaagtccaaattg
gggcaaacacctcaaaaaaatgaccaaggaaaaagaaaaattagtccaaacaagaaggag
tcagagtctaaaaagagcaaactgactccccaaaagtgcagcccggcgaaggccatgaag
aaggaagcagatgtgtttcagagggccctggacttcacggagcaggaggtcaaggagacg
tctggccacagcagagctcagggtctggctggggacagcggcggggacaaagtggagagc
ctgctctgggtggacaagtacaagcccacctcgctcaagcacataatcgggcagcaaggt
gaccagagctgtgccaacaaactgctgcgctggctcagaaactggcataagagttctccc
gaagagaaaaaacacgcagcaaaatttggcaaactttccagcaaagatgatggttccagt
ttcaaggcagcattgctgtctggccctccgggtgttggcaaaaccactacagcttctctt
gtgtgtcaggaattgggctacagttacgtggaactaaatgcaagtgatactcggagtaag
aacagtttgaaagcagttgttgctgagtcattgaacaacaccagcatcaaaggcttttat
acaagtggagcagctccttcggtaggctcgaaacatgctctcatcatggatgaggtcgat
ggcatggcaggcagtgaggacaggggcggaattcaggaactcataggcctgataaagcat
actaaaattcctatcatttgtatgtgcaatgatagaaatcaccccaaaattcgctctttg
gttcattattgttttgatcttcgtttccaaagacctcgggttgaacaaattaagagtgcg
atgctgtctattgcatttaaagagggtttgaagatcccccctccagccatgaatgaaata
attttgggagctaatcaagatgtcagacaggttttacataatatgagtatgtggtgtgca
caaagtaaggcactaacgtatgaccaagccaaggctgattctcagagggccaagaaggac
atcaaattgggcccatttgacgttgcccggaaggtgtttgcagctggagaggagactgca
cacatgtcactgatggacaaatcggatctctttttccatgactattccatagcccccctc
tttgttcaggaaaactatgtccatgtgaagcctgtggctgcagggggtgacatgaaaaag
cacttgatgcttttaagccgggcggcagacagtatatgtgacggtgacttagtggacagt
cagatccggagtaagcagagctggagtcttctgcccacacaggccatttatgccagtgtt
cttcctggagagttgatgaggggctacatgactcagtttcccagcttcccaagctggctg
gggaagcactcatctacgggcaaacatgaccggattgttcaggacctggccttgcacatg
agtcttagaacttactccagcaaaaggacggtgaacatggattacctgtcacacatcaga
gatgcacttgtgcgacccttgacctcacaaggggtagaaggagttcagcatgttgtcaca
cttatggacacatattatttaatgagagaagactttgagaatatcatggaagttagcagc
tggggtggcaagcccagtcccttttccaagctggatcctaaggtgaaagcagccttcaca
agagcttataataaggaggtccacctgaccccgtactcgcttcaggcagtcaagacatcg
agactcagcacaggcccagcactggattctgagtaccatgaagagtcacaggaagatgac
agtcagtctgatgagaaggagcaggatgccatagagactgatgccatgatcaagaaaaag
acaggatcttcaaagtcttcaaaaccagacaaagataaggagtccaaaaaaggaaaagga
agaagttggaagaaatga
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