Arvicola amphibius (Eurasian water vole): 119807055
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Entry
119807055 CDS
T08327
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aamp04121
]
119807055 (Pdzrn3)
Enzymes [BR:
aamp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119807055 (Pdzrn3)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
119807055 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
119807055
NCBI-ProteinID:
XP_038175127
LinkDB
All DBs
Position
2:46590451..46819867
Genome browser
AA seq
1063 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQL
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPPAG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCVDNQDGPSSEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMFTPASESQLVDTGTQT
DITFEHIMALTKMSSPSPPVLDPYLLPEEHPSSHEYYDPNDYMGDIHQDMDREELELEEV
GLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWLDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNGEDPTASSNPL
AGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVQSSS
PYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELECLSIVRAHKMQQLKEQYRESW
MLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSL
RRMAEGSSEGATANIEAYRPSPKNLLAITEDPEVSTPNYSPSAKELDPSQALESKERRVS
DGSRSPTASPKLGSAYLPSYHHSPYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLV
SMCKDLNSSNSSEPRMEWKVKIRSDGTRYITKRPVRDRLLRERALKIREERSGLTTDDDA
MSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQAADDRKEMNILELSHK
KMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggtttcgagttggaccgcttcgatggcgacgtggaccccgatctgaagtgcgcgctg
tgtcacaaggtcctggaggacccgctgaccaccccgtgtggccacgtattctgtgctggc
tgcgtgctgccctgggtagtgcaggagggcagttgcccggcgcgttgtcgcggtcgcctg
tcggccaaggagctcaaccacgtcctgccgcttaagcgcctcatcctgaagttggacatc
aagtgcgcgcacgcggcgcggggctgcggccgggtggtcaagttgcaagagctgcccgaa
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccagctg
ctgctgcgacgcgacgtggaggcccacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggctctgcgggctcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgcgagaagtcgctagtggcg
cagctggccgcggcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgctgcgtggccgcgccgcccgcaggc
aagggtgaagaaaccaaaagcctgactcttgttcttcaccgggactctggctccctggga
ttcaatattattggcggccggccatgtgtggacaatcaagatggaccctccagtgaagga
atctttgtatccaaaatagttgacagcgggccggcagccaaggaaggaggcctgcaaatt
catgacaggattattgaggtcaatggcaaagacttatcccgagcaactcatgaccaggcc
gtggaagctttcaagacagccaaggagcccatcgtggtacaggtgttgagaaggacacct
cgaaccaaaatgttcacgcctgcctcagagtctcagctggtagacacaggcacccaaact
gacattaccttcgagcacatcatggccctgacaaagatgtcttctcccagcccacctgtg
ctggatccctacctgctgcctgaagagcacccctcatcccatgaatactatgatccgaat
gactacatgggggacatccatcaggacatggacagggaggagctggagctagaggaagtg
ggcctctacaggatgaacagccaagacaagctgggcctcaccgtatgctaccggacggat
gacgaagatgacattgggatttatataagtgagattgaccctaacagcatcgcagccaag
gatggccgcatccgtgaaggagaccgcatcatccagattaatgggatagaagtacagaac
cgtgaagaggctgtggctctcctaaccagtgaggaaaacaagaacttctcgttgctgatt
gcaaggcctgaactccagctggacgagggctggctggatgacgacaggaatgactttctg
gatgacttgcacatggacatgcttgaggagcagcaccaccaggccatgcagttcacagcc
agtgtgctccaacagaagaagcatgaggaagatggtggaaccacagacacagccaccatc
ttatccaaccagcacgagaaagacagcggtgtagggcggacagatgagagcacacgcaac
gacgagagctccgaacaggagaacaacggtgaagaccccacggcgtcctccaacccgctg
gcgggccagaggaagctgacctgtagccaagacaccctaggcagtggcgacctgcctttc
agcaatgaatcgttcatctctgcagactgtaccgatgtggattacctgggcatcccagta
gatgagtgtgagcgttttcgcgagctgctggagctcaagtgccaggtacagagcagcagt
ccctacagcctgtactaccccagcagccctctggacgctgctggcaagagcgaccctgaa
agtgtggacaaggagctggagctactcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgtgcgcacaagatgcagcagcttaaggaacaataccgcgagtcctgg
atgctgcaccacagtggcttccgcaactacaacaccagcgtggatgtgcgccgccatgag
ctctcggacatcaccgaactgcccgagaagtcagacaaggatagctcgagcgcatacaac
actggggagagctgccgcagtaccccactcaccctggagatatccccagacaactccctg
cgaaggatggccgagggaagtagcgaaggggccacggccaacatcgaagcctacaggcca
tcccccaagaatctgctcgccatcactgaggatcctgaagtaagcaccccaaactacagc
cccagcgccaaagagctggaccccagccaggccttggagagcaaagagcgccgagttagc
gatggcagcaggagccccaccgccagcccaaagctgggcagtgcctacctgccgtcatac
caccactccccatacaagcacgcccacatcccagcgcacgcccagcactaccagagctac
atgcacctgatccagcagaagtcggcggtggagtatgcgcaaagccagatgagcctggtg
agcatgtgcaaggacttgaactcctctaattcgtcggaaccccggatggagtggaaagta
aagatccgcagcgacggaacacgctacatcaccaaaaggccggtgcgtgaccggctgctg
cgggaacgtgcgctgaagatccgcgaggaacgcagcggcctgaccacggatgatgacgcc
atgagtgagatgaagatggggcgctactggagcaaggaggagcgcaaacagcatctggtg
aaggccaaggagcaaaggcggaggcgcgagtttatgatgcagagcaggctggattgtctg
aaggagcagcaggcggctgatgacaggaaggagatgaacatcctggaactgagccacaaa
aagatgatgaagaagaggaacaaaaagatctttgacaattggatgaccatccaagaactc
ttaacccatggcacaaaatcgccagacggcactagggtatacaattccttcctgtcggtg
actactgtttaa
DBGET
integrated database retrieval system
