Arvicola amphibius (Eurasian water vole): 119807807
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Entry
119807807 CDS
T08327
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119807807 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119807807 (Polr1a)
Enzymes [BR:
aamp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119807807 (Polr1a)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119807807 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
119807807
NCBI-ProteinID:
XP_038175890
LinkDB
All DBs
Position
2:complement(75767722..75831916)
Genome browser
AA seq
1717 aa
AA seq
DB search
MLSSKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAIHLL
VCQLRVLEVGALQAVYELEQILSRFLEETADPSAFEIQEELEEYTSKILQNNLLGSQGAH
VKNVCESRSKLVANFWRTHMTAKRCPHCKTGRSVVRKEHNSKLTITYPATVHKKTGQKDA
EPPEGVPAAPGIEEALLGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGMESSFN
PSMFFLDFIVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EVTELTTDKENDSSVAIDRSFLSTLPGQSLTDKLYNIWIRLQSHVNIVFDSEMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPLVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDATQREAVAKQLLTPATGAPKPH
GTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFPPAIMKPYPLWTGKQVVSTLLINIIPEDYTPLNLSGKAKIGS
KAWVKETPRPVPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPDADMKRQRIIEESTQCGPRAVRAALNL
PEAASCDEIQGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFITG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLVSNYEVIMKSKHLHEVLSRADPQKVLRHFKAIK
KWHSKHSSALLRKGAFLSFSQKIQAAVKALNLKGKNENGRSPETQQMLQMWYELDEQSRW
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIADYTKEWAAQAERSYKKPELSLDSLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLQKVDVQESFHMGERQNKFR
MYELRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKALAFRSVNTRRAT
QKDLDDAEDSGKNRREEEGDEEEEGNIVDAEAEEGDADASDTKRKEKQEEEVDYESEEEG
EEEVEEEDAQEEGNINSEGAHQAHEPGEEEGSGLEEESSQKPPRRHSRPQGAEAVERRIQ
TVLEAHSFIEDYQYDTEESLWCQVTLKLPLMKTNFDMSSLVVDLTHNAIVYTTKGITRCL
LKETTNSKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEK
EIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSSSSPLQQMTFETSFQFLKQ
ATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcctccaagcacacgccatggaggcggcttcagggcatttccttcgggatgtat
tcggccgaggagctcaagaaattaagtgttaaatccattacaaatcctcgctatgtggac
agcctgggaaacccttcagcaaatggcctgtatgatttggctttgggtcccgcagattcc
aaagaagtgtgttccacctgcgtgcaggacttcaacaactgctcaggacacctgggccac
attgagctcccgctcacggtgtataaccctctcctcttcgataaactctacctcctgctc
cgaggctcctgtttaaattgccacatgctgacttgtcctcgggctgccattcacctgttg
gtctgccagcttcgagtcctagaagttggagctctacaagcggtctatgagcttgaacaa
attctgagcaggtttctggaagaaactgctgatccttctgcctttgaaattcaagaagag
ttagaagaatacacaagcaaaattctacagaacaacctcttggggtcccaaggtgcacat
gtgaaaaatgtctgcgaaagcaggagcaaactcgttgctaacttctggaggacgcatatg
accgctaagcgatgtccccactgcaagactggacggtcagtggttcgaaaggaacacaac
agtaagctaacaattacatacccagccacggtgcacaaaaaaactggccagaaggatgca
gagcccccagaaggagtacctgcagctccgggaattgaggaagctctgttggggaagcga
gggtacctgacgcctagcagcgcccaagagcatctctttgccatttggaagaatgaagga
ttcttcctgaattaccttttttcgggattggatgatattggcatggagtccagtttcaac
cctagtatgttctttctagatttcatagttgtgccgccttccaggtatcgccccgtcaac
cgcctgggggaccagatgtttactaacggccagacggtgaacttgcaagctgtcatgaag
gatgcagttttgattcggaaacttctggcattgatggcccaagaacagaagctgccctgt
gaggtgacagagctcaccacagacaaggaaaatgactcttcagttgctatcgaccgatcc
tttttaagtacgcttccaggccagtctctcacagataagctttacaacatttggattcgc
cttcagagccacgtcaatattgtatttgacagtgagatggacaaattaatgctggagaag
taccctggcataagacagatccttgagaagaaggaaggcctgttccggaagcacatgatg
ggaaagcgagtcgactatgctgcccgttcggtcatttgcccagatatgtacatcaacacc
aatgagattgggattcccttggtatttgccacaaaactgacctaccctcagccagttacc
ccctggaacgtgcaggaactgagacaagcagtcattaatggacccaacgtgcacccagga
gcctccatggtcatcaatgaggatggcagtcgcacagccctgagcgcagtggatgctaca
cagcgagaagctgtggccaaacagctcttgacaccagccacaggggctcctaagccccac
gggacaaaaattgtgtgccggcacgtgaagaatggggacattctcctactgaaccgacag
cctaccttgcacagaccctccatccaggcccaccgtgcccacattctgcccgaagaaaag
gtcctacgccttcactatgccaactgcaaagcctacaatgctgactttgatggagacgag
atgaacgcccacttcccacagagtgagttaggccgagctgaagcctatgtcctggcctgc
actgatcagcagtatcttgttcccaaggatggccagccattggcaggactgattcaagat
cacatggtttcaggtgcaaacatgaccattcggggatgctttttcacccgggagcagtac
atggagctggtgtaccggggactcacagacaaagtgggacgtgtgaagctctttcctcct
gccatcatgaagccctacccactgtggacagggaagcaggttgtgtcaaccctgctcata
aacataatcccagaggactacacccccctgaacttatctggaaaggcaaaaatcggcagt
aaagcctgggtgaaggaaactccacggcctgttcctgactttgaccctgactccatgtgt
gagtctcaggtgatcatcagggaaggggagctgctctgtggagtgctggacaaggcacac
tacgggagctctgcctatggcctggtccactgctgctatgagatctatgggggagagacc
agcggcagggttctcacctgcctagcccgtctcttcactgcctacctgcagctctataga
ggtttcaccttgggtgtagaagacattttggttaagccagatgcagacatgaagagacag
cgcatcattgaagaatccacccagtgtgggccccgggccgtcagagctgcattgaacctg
ccagaagctgcatcatgtgatgagatccaagggaaatggcaggatgcccatttggggaaa
gaccagagggattttaatatgattgacatgaagttcaaggaggaagtgaaccattacagc
aatgaaatcaacaaggcatgtatgccttttggcttgcacagacagttccctgagaacaac
ctgcagatgatggtacagtcgggagccaaagggtcaaccgtgaatacgatgcaaatctct
tgcctgctgggccagattgagttggaaggtcggagacccccgttgatggcatctggcaag
tcactaccctgctttgagccttacgagttcacccccagggctgggggcttcatcactgga
aggttccttactggtatcaggcctcctgagttcttctttcactgcatggccggacgagaa
ggcctggtggacactgctgtcaaaaccagccgctctggctatctccaaaggtgtatcatc
aagcacctggaggggctggtcatccagtatgatctgaccgtccgtgatagcgacggcagc
gtggtacagttcctatatggggaggatggcctggacatccccaagacacagttcctgcag
cccaagcagttccccttcctggtcagcaactatgaggtgataatgaagtccaagcatctt
catgaagttttatccagagcagatccccaaaaagtgctccgccacttcaaagccattaag
aaatggcatagcaagcattccagtgccctgctgcgaaaaggcgccttcctgagtttttcc
cagaagattcaggcagctgtgaaagccttgaacctaaagggcaagaacgagaatggccgc
agcccagaaacccagcagatgttgcagatgtggtatgaactagatgagcagagccgatgg
aaataccagaagagggctgctccttgtcccgaccctagcctgtctgtgtggcgcccagac
atctactttgcatctgtgtctgaaacatttgaaaaaaaaattgctgactacactaaggag
tgggcagctcaagcagagaggagttacaagaaaccagagctttcgctcgacagcctgaga
accttactgcagttaaagtggcagcgctccctgtgtgacccaggcgaggctgttggccta
ctggctgcccagagcatcggggagccctccacacagatgacactgaacaccttccacttt
gcaggtcgaggcgagatgaatgtcactctgggcattccgagactgagggagattctcatg
gtggccagtgccaacatcaagacacccatgatgagcgtgcctgtgttcaacaccaagaaa
gcattgaagcgagtgaagagcctaaagaagcagctcaccagggtgtgcctgggggaggta
ttacagaaagtcgatgtccaagagtccttccatatgggagaaagacagaacaaattccgg
atgtatgagctccggtttcagttcctgccgcatgcatattaccagcaggagaagtgcctg
agacctgaggacatcttgcacttcatggaaaccagattctttaaactactaatggaagcc
atcaaaaagaagaatagcaaagcattggccttcagaagtgtgaatactagaagggctaca
cagaaggaccttgatgacgcggaggactcagggaagaatcggagagaggaagaaggggat
gaagaagaggaggggaacattgtggatgctgaagctgaggagggtgatgcagatgcttcg
gacaccaaacgcaaggagaagcaagaggaagaggttgactatgagagcgaggaagaaggg
gaggaggaagtggaggaggaagatgcccaagaggaagggaacatcaacagcgaaggtgcc
caccaggctcatgagccaggcgaggaagagggttcgggcctggaggaggaatcatcccag
aagcctccccgccggcactccaggcctcagggagcagaggctgtggaacgcaggatccag
actgtgctggaggcccactcattcattgaggactaccagtatgacacagaggagagccta
tggtgccaggtgactctgaagctcccactgatgaagactaattttgacatgagctccttg
gttgtggacttgacccacaatgccattgtctatacaaccaagggaatcactcggtgcctc
ctgaaggaaacaaccaacagtaagaatgagaaggagcttgtgctgaacacagagggaatc
aacctccccgagctgttcaagtactctgaggtgctggacctgcgccgcctctactccaat
gacatccatgccatggccaacacttacggcatcgaggctgcactgagggtcattgagaag
gagattaaggatgtgtttgctgtgtatggcattgcagttgaccctcgccatctctccctg
gtcgctgactatatgtgttttgagggtgtttataagccactcaatcgctttgggatccag
tcaagttcctcccctttgcagcagatgacatttgaaaccagcttccagtttctcaaacag
gccaccatgatgggatcccatgatgaactgaaatcaccttcagcctgtctcgtggtgggg
aaagtcgtcaaaggcgggacaggcctgttcgagctcaagcagcccctaagatag
DBGET
integrated database retrieval system
