Arvicola amphibius (Eurasian water vole): 119808842
Help
Entry
119808842 CDS
T08327
Symbol
Mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119808842 (Mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119808842 (Mtrex)
03041 Spliceosome [BR:
aamp03041
]
119808842 (Mtrex)
03009 Ribosome biogenesis [BR:
aamp03009
]
119808842 (Mtrex)
03016 Transfer RNA biogenesis [BR:
aamp03016
]
119808842 (Mtrex)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119808842 (Mtrex)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119808842 (Mtrex)
Spliceosome [BR:
aamp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119808842 (Mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
119808842 (Mtrex)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
Pre-60S particles
Helicases
119808842 (Mtrex)
Transfer RNA biogenesis [BR:
aamp03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119808842 (Mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
119808842
NCBI-ProteinID:
XP_038177246
LinkDB
All DBs
Position
3:35695921..35758894
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGAKKDKEKEKEKWKGPPGTTDKAGKRLDAKLQSESASGV
KNKRDEDVEGTDESIFGKKPRIDDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
EYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAVDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEDTYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggagacgagcttttcagcgttttcgaggatgattcgaccactgca
gccggagccaagaaagacaaagaaaaggagaaggagaaatggaaggggccaccagggacc
acggacaaggccgggaaacgactggatgccaaactacaatcagaatcagccagtggtgtt
aaaaacaagagagatgaagatgttgaaggcacagatgaatcaatttttggcaagaagccc
agaatagacgattcaattaatgaagacttaagtttggcagacctgatgccgagagtgaag
gtacaatcagttgaaacagttgaaggctgtacacatgaggttgctcttcctgcagatgaa
gaatatataccacttaaacctcgagttggaaaggcagcaaaggaatacccattcattctt
gatgctttccaaagagaagccattcagtgtgtcgataataatcagtccgtgttagtgtct
gctcatacatcagcaggaaaaactgtgtgtgctgagtatgcaattgcattggctttaagg
gaaaagcagcgtgtaatatttaccagcccaattaaggctcttagtaaccagaaataccgt
gaaatgtatgaagagtttcaagatgtcggtctgatgactggagatgtcactattaatcct
acagcgtcttgtcttgttatgactacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtagtatgggaagaaactattattttgcttccagataatgtccattatgtc
tttctttctgctactatcccgaatgctcgacagtttgctgaatggatttgccacctacat
aaacagccctgtcatgtaatttatactgattatcgacctactccattgcaacattatata
tttccagcagggggagatggccttcaccttgtggttgacgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtgcttcgggatgcaggtgatttggccaaaggagac
cagaagggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcagcctgtaattatcttcagttttagtaagaaagattgtgaa
gcatatgctcttcaaatgactaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgcaattgactgcttgtctgatgaagataaaaagctccctcag
gttgagcatgtacttcctcttttgaaacgggggattggtattcaccatggtggtttactt
cctattttgaaggaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaaccgttttatttacaaat
gcccgtaaatttgatgggaaggattttagatggatttcctctggtgagtatatccagatg
tctggccgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagat
gaaaagatgagcccaacaattggaaaacaactacttaagggctcagctgatcctctgaat
agtgctttccatctgacctataacatggttttgaacttattacgagtagaagaaattaat
cctgagtacatgctggaaaaatccttctaccagtttcagcattacagagccattccagga
gtagtagagaaggtcaagaactcagaagagcagtataataaaatagtgatccccaatgaa
gaaaatgtggttatctattataagattagacaacaacttgccaaactgggaaaagagatt
gaagaatatattcataagccaaaatactgcttaccatttctacagccaggtcgcttggta
aaggtgaaaaatgaaggagatgattttggctggggtgtagtagtgaatttctcaaaaaaa
tcaaacgttaagcctaattctggagaactggaccctttgtatgtggtggaagtgctgctg
cgctgcagcaaagagagcctgaaaaattctgcaactgaggcagcaaagccagcaaaacct
gacgagaaaggagagatgcaggttgtcccagttttggtgcatctcttgtctgccatcagc
actgttaggctttacatcccgaaagaccttcggcctgtggacaacagacagagtgtttta
aagtccatacaggaagttcagaagcgttttcctgatggtgttcctttgttagatcctatt
gatgatatgggcattcaagatcaaggactaaaaaaagtcattcagaaagtagaggctttt
gagcatcgaatgtattctcatccacttcacaatgatccaaatctggaaaccgtgtataca
ctttgtgagaaaaaagcacagattgcagtagatattaaatctgcaaagcgagaattgaag
aaagcaagaaccgtcctgcaaatggatgaactcaaatgtcgcaaacgtgttttgaggaga
ttgggctttgctacgtcttctgacgtaatagagatgaaaggacgtgtggcttgtgaaata
agcagtgctgatgagctccttctaacagagatgatgtttaatgggcttttcaatgacctt
tctgcagaacaggcaactgcactattgagctgttttgtgtttcaagaaaattctagtgag
atgcccaaactaacagaacagttggctggaccacttcgacaaatgcaggaatgtgctaaa
aggattgcaaaggtttcagcagaagcaaaactggagattgatgaagacacttacctaagc
tcgttcaagcctcacctgatggatgtggtgtatacctgggcaactggagccacatttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacacggagctggag
aacaaatttgctgaaggaatcaccaaaatcaagagggatattgtatttgctgccagcctc
tacttgtag
DBGET
integrated database retrieval system
