Arvicola amphibius (Eurasian water vole): 119809077
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Entry
119809077 CDS
T08327
Symbol
Scn10a
Name
(RefSeq) sodium channel protein type 10 subunit alpha isoform X1
KO
K04842
voltage-gated sodium channel type X alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119809077 (Scn10a)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
119809077 (Scn10a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
IQ_SCN5A_C
Na_trans_cytopl
GPHH
CcmD_alt
IQ
Motif
Other DBs
NCBI-GeneID:
119809077
NCBI-ProteinID:
XP_038177708
LinkDB
All DBs
Position
3:complement(185103492..185208657)
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AA seq
1959 aa
AA seq
DB search
MEFPFGSVETTNFRRFTPESLSEIEKQIAAHRAAKKAKAKRGERKGQNEKPRPQLDLKAC
NQLPRFYGELPAELVGEPLEDLDPFYSTHRTFMVLNKGRTISRFSATWALFLFSPFNLIR
RTAIKVSVHSWFSIFITITILFNCVCMTQSDLPEKIEYAFTVIYTFEALIKILARGFCLN
EFTYLRDPWNWLDFSVITLAYVGAAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALI
HSVRKLADVTILTAFCLSVFALVGLQLFKGNLKNKCIRNGTDPHKAHNFSVEMAENYYIK
NGTTDPLLCGNGSDAGHCPSGYICLKTSENPDFNYTSFDSFAWAFLALFRLMTQDSWERL
YQQTLRASGKMYMVFFVLVIFLGSFYLVNLILAVVTMAYEEQNQATIAEIEAKEKKFQEA
LEVLQKEQEVLAALGIDRTSLPSHNGSPLAPRNSHERKHRMKSRVSEGSTDDNRSPQSEP
YNQRRMSFLGLSSGRRRASHGSVFHFRAPGQDVSFPDGITDDGVFHGDHEGHRGSLLLSR
GAGQAGPLPKSPLLRSPKPGPGHGEEGPLTLPTGELAAGGPEGLALEAAGQKKNYLSAEY
LNEPFRAQRAMSVVSIMTSVIEELEESKLRCPPCLISLAQKCLIWECSPKWMKFKMVLFE
LVTDPFAELTITLCIVVNTVFMAMEYYPMTESFEAMLQAGNIVFTVFFTMEMAFKIIAFD
PYYYFQKKWNIFDCVIVTVSLLELSIAKKGSLSVLRTFRLLRVFKLAKSWPTLNTLIKII
GNSVGALGNLTFILAIIVFIFALVGKQLLGEYYGCRKDGVALWKDEQLRWHMCDFFHSFL
VIFRILCGEWIENMWVCMQVSEKSICLILFLTVMVLGNLVVLNLFIALLLNSFSADNLTA
PEDDGEVNNLQVALARIQAFGHQSSQAISSYFRSHCRLRWPKVEPQLGVKPSLPSSKAEN
HIAADAVNNAVGSPAKPALNGPKEDHRDFITDANVWVSVPIAEGESDLEELEEDIEQNSQ
SSWKEESPKGQQAQLPEEQRHEGLEVPKSPGSGMSSEDLAPYLGDRWKGDTTPQVPAEGE
DDTSSSEGSTVDCPDPEEILRKIPELADELDQPDDCFTEGCTRHCPCCKVNTSKFPWATG
WQLRKTCYRIVEHSWFESFIIFMILLSSGALAFEDNYLEQKPRVKAMLEYTDRVFTFIFV
FEMLLKWVAYGFKRYFTNAWCWLDFLIVNISLTSLIAKILEYSDVASIKALRTLRALRPL
RALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFSKCIDTSNNLF
SAVNSTIVTNKSDCCNQNYTGHYFWVNVKVNFDNVAMGYLALLQVATFKGWMEIMYAAVD
SGEINSQPQWEYSLYMYLYFVVFIIFGGFFTLNLFVGVIIDNFNQQKKKIRGQDIFMTEE
QKKYYNAMKKLGSKKPQKPIPRPLNKYLGFVFDIVTRQAFDIAIMVLICLNMVTMMVETD
DQSEEKTKVLGRINQFFVAVFTGECVLKMVALRQYYFTNGWNVFDFIVVILSIGSLVFSA
ILTSLENYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYSIFGMASFANVVEEAGIDDMFNFKTFGNSMLCLFQITTSAGWDGLLSPILNTGPPYC
DPNLPNSNGSRGNCGSPAVGIVFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSE
DDFDMFYETWEKFDPKATQFIAFSALSDFADTLSGPLRIPKPNQNILIQMDLPLVPGDKI
HCLDILFAFTKNVLGESGELDSLKTNMEEKFMATNLSKESYEPIATTLRWKQEDISATVI
QKAYRSYVLQRSLTLSNPLSVPRAEEEDGPLPGEGYVTFMANEGGGLPDKSETASATSFP
PSYDSVTRGLSDRVNISTSSSMQNEDEVTSKEGNSPGPQ
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atggagttcccctttgggtccgtggaaactactaacttccggcggttcactccggagtcg
ctgtcagagatcgagaagcaaattgcagcccatcgtgctgccaagaaggccaaagctaag
cgtggagagcggaagggccagaatgagaagcccaggcctcagctagatttgaaagcctgc
aaccagctgcccaggttctacggtgagctccccgcggaactggttggggagcccctggag
gacctagacccgttctacagcacacaccggacgttcatggtgttgaataaaggcaggacc
atttccaggttcagtgccacttgggcactgtttctcttcagtcccttcaacctgatcaga
agaacggccatcaaggtgtctgtccactcctggttctccatattcattaccatcacaatt
ttgttcaactgtgtatgcatgacccaaagtgatcttccggagaaaatcgagtacgccttc
actgtcatttacaccttcgaagctctgataaagatactggcaagaggattttgtctaaat
gagttcacttatctgcgagatccctggaactggctggacttcagcgtcatcaccctggcg
tatgtcggggcagcaatagacctccgaggaatctcaggcctacggacattccgagttctc
agagccctgaaaactgtttctgtgatcccaggactgaaggtcatcgtgggagccctgatc
cactcagtgagaaagttggctgacgtgaccatccttaccgccttctgcctcagcgtcttt
gccttggtgggcctgcagctcttcaaggggaacctgaagaacaaatgcatcaggaatggc
acagatccccacaaggctcataatttctcagtggaaatggcagaaaattactacatcaag
aatggtactactgaccctttgttatgcggcaatggatccgatgctggtcactgccccagt
ggttacatctgcctgaaaacatctgaaaatccggattttaactacaccagctttgattcc
ttcgcgtgggcattccttgcgctgttccgcctcatgacgcaggactcctgggagcgtctg
taccagcagacactccgggcctctgggaaaatgtacatggtctttttcgtgctggtcatc
ttccttggatcattctacctggtcaatttgatcttggctgtggtcaccatggcatatgag
gagcagaaccaggcaacaatcgcagagatcgaagccaaggaaaagaagttccaggaagcc
cttgaagtgctgcagaaggaacaggaggtgctggcagccctggggattgacaggacctca
ctcccttcccacaatggatcaccattagcccccagaaactcccatgagagaaaacacaga
atgaaatcaagggtgtcagagggctctacagatgacaaccggtcaccccaatctgagcct
tacaatcaacgcaggatgtctttcctaggcctttcttctggaagacgcagggctagccac
ggcagtgtgttccacttccgagcacctggacaagatgtctcatttcctgatgggatcaca
gatgatggagtctttcacggagaccacgaaggccatcgaggttccctgttgctgagcagg
ggtgctgggcaggcaggtcctctcccgaagagcccactgcttcggtctccaaagcctggt
cctggacatggggaagagggaccgctcacactgcccactggtgagcttgctgctggaggt
cccgaaggcctggcacttgaggctgcaggacagaagaagaattatctgtctgcagaatac
ttgaacgagcctttccgcgcacagagggcgatgagcgttgtcagtatcatgacttctgtc
attgaggagcttgaagagtctaagctgaggtgcccgccctgcctgatcagcttggctcag
aagtgtcttatctgggagtgcagccccaagtggatgaagttcaagatggttctctttgag
ctggtgaccgatccctttgccgagctcaccatcaccctctgcattgtggtgaacaccgtc
ttcatggccatggagtactacccgatgaccgagtccttcgaggccatgctccaagccggc
aacattgtcttcacggtgtttttcacaatggagatggccttcaagatcattgccttcgac
ccctactactacttccagaagaagtggaacatctttgactgcgtcatcgtcaccgtgagc
ctgctggagctgagcatagccaagaagggcagcctgtctgtgctccgcaccttccgtctg
ctgcgggtcttcaagctggccaagtcctggcccaccctgaacacgctcatcaagatcatc
ggcaactcggtgggggccctgggcaacctgaccttcatcctggccatcatcgtcttcatc
ttcgccctggtcggaaagcagcttctcggggagtactacgggtgccgcaaggacggtgtt
gctctgtggaaggatgagcagctccgctggcacatgtgtgacttcttccattccttcctc
gtcatcttccggatcctgtgtggagagtggattgagaacatgtgggtctgcatgcaagtc
agcgagaaatccatctgcctcatcctgttcttgactgtgatggtgctgggcaacctggtg
gtgctcaaccttttcatcgccttgctgctgaactccttcagtgctgacaatctcacagcc
ccggaggatgatggggaggtcaacaacttacaggtagcattggccaggattcaggcattt
ggccatcagtccagtcaggccatttccagttacttcaggagccactgccggctccgctgg
ccgaaggtggagccccagctcggggtaaaaccctccctccccagctccaaagctgagaac
cacattgctgctgatgccgtcaacaatgcagtggggagcccagcaaagccagctctcaat
ggccccaaggaagaccacagggacttcatcaccgatgctaatgtgtgggtttcagtcccc
attgctgagggagaatctgatctcgaggagcttgaggaagacattgaacagaattctcag
agctcttggaaggaagagagccccaaaggacagcaggcacagctgccggaagaacaaagg
cacgaaggccttgaagtgcctaagagcccgggctctgggatgtcctcggaggacctggct
ccgtacctgggtgacagatggaagggtgacaccacccctcaggtccctgctgagggagag
gatgacacaagctcttctgagggcagcacagtggactgcccggacccagaggaaatcctc
aggaagatccccgagctggcagacgagctggatcagccagatgactgcttcacagaaggc
tgcactcgccactgcccctgctgcaaagtgaataccagtaagtttccatgggccacaggc
tggcagttgcggaaaacctgctaccgcatcgtggagcacagctggttcgagagtttcatc
atcttcatgatcctgctcagcagtggagcactggcctttgaggataactacctggaacaa
aagccccgagtgaaggctatgctggagtacaccgacagagtgttcaccttcatctttgtg
tttgagatgctgctcaagtgggtagcttatggcttcaaaagatatttcaccaatgcctgg
tgctggctggacttcctcattgtgaatatctccctgacaagcctcatagccaagatcctt
gaatattcggatgtggcgtccatcaaagcccttcggactctccgcgctctacggccactg
cgggctctgtctcgattcgaaggcatgagggtagtggtggatgcgctggtgggcgccatc
ccgtccatcatgaacgtcctcctcgtctgcctcatcttctggctcatcttcagcatcatg
ggcgtgaacctctttgcggggaaattttcaaagtgcatcgacaccagcaataatctgttt
tctgctgtgaattcgaccattgtgacaaacaagtctgactgttgcaaccaaaactacacc
ggccactacttctgggtcaacgtgaaagtcaactttgacaatgttgctatgggttacctg
gctcttcttcaggtggcaaccttcaaaggctggatggaaattatgtatgctgctgtcgat
tccggagagatcaacagtcagcctcagtgggagtacagcttgtacatgtacctatacttc
gtcgtcttcatcatctttggtggcttctttacgctgaatctctttgttggggtcataatt
gacaacttcaatcaacagaaaaaaaagataaggggccaggacatcttcatgacggaggag
cagaagaagtactacaacgccatgaagaagctgggctctaagaagccccagaagcccatc
ccgcggcccctgaataagtacctgggctttgtgtttgacatcgtgaccaggcaagctttt
gacatcgccattatggtcctcatttgcctcaacatggtcaccatgatggtggagaccgac
gaccagagtgaagagaagaccaaggtcctgggcaggatcaaccagttcttcgtggccgtc
ttcacgggcgagtgcgtgctgaagatggtcgccctgcgccagtactacttcaccaatggc
tggaatgtgtttgacttcatcgtggtgatcctgtccattgggagtctggtgttttctgca
atccttacatcacttgaaaattacttctccccgacgctcttccgggtcatccgtctggcc
agaatcggccgcatcctcaggctgatccgagcggccaaggggatccgtacactgctcttc
gccctcatgatgtccctgcccgccctcttcaacatcggcctcctgctcttcctcgtcatg
ttcatctactccatcttcggcatggccagcttcgccaatgttgtggaagaggctggcatt
gatgacatgttcaacttcaagacctttggcaacagcatgctgtgccttttccagatcacc
acatcagctggctgggacggcctcctcagccccatcctcaacacaggacccccatactgt
gaccccaatctgcccaacagcaatggctcccgggggaattgtgggagcccagcggtgggt
atcgtcttcttcaccacctacatcatcatctccttcctcattgtggtcaacatgtacatc
gccgtgatcctggaaaacttcaatgtggctacggaagagagcacggagcccctgagcgag
gatgactttgacatgttctatgagacctgggagaagttcgaccccaaggccactcaattc
attgccttttctgccctctcggactttgcagacacactctccggccctcttagaatccca
aagccgaaccagaacatattgatccagatggacctgccgctggtccctggagataagatc
cactgtttggatatcctctttgccttcacgaagaatgtcttgggagaatctggagagttg
gattctctgaagactaatatggaagagaaatttatggccactaatctttccaaagaatcc
tatgaaccaatagcaaccacgctccgatggaagcaggaagacatctcagccactgtcatt
caaaaggcctatcggagctatgtgttacaacgctccttgacactctccaacccccttagt
gtacccagggctgaagaggaagacggaccactccctggtgaaggctatgttacattcatg
gcaaatgaaggtggtgggctcccagacaaatcagaaactgcttctgccacatctttccca
ccatcctatgatagtgtcaccaggggcctgagtgacagggtcaacattagtacatccagc
tcaatgcaaaatgaagatgaagtcaccagtaaggaggggaacagccctggaccccagtga
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