Arvicola amphibius (Eurasian water vole): 119809138
Help
Entry
119809138 CDS
T08327
Symbol
Tnpo1
Name
(RefSeq) transportin-1 isoform X1
KO
K18752
transportin-1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119809138 (Tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119809138 (Tnpo1)
03009 Ribosome biogenesis [BR:
aamp03009
]
119809138 (Tnpo1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119809138 (Tnpo1)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
119809138 (Tnpo1)
Pre-60S particles
119809138 (Tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
Vac14_Fab1_bd
TOR1L1_N
IBN_N
HEAT_EF3_N
TPR_IPO5
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
MMS19_C
CEP104-like_TOG
HEAT_GCN1_C
HEAT_GCN1_C_2
INTS7_N
UNC45-central
TPR_TTI1_C
Dopey_N
SCD
VPS15-like_hel
RTP1_C1
ARM_TBCD
DUF3689
Motif
Other DBs
NCBI-GeneID:
119809138
NCBI-ProteinID:
XP_038177859
LinkDB
All DBs
Position
3:48687529..48771144
Genome browser
AA seq
898 aa
AA seq
DB search
MVWDRQTKMEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIF
VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGI
LITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL
NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEAEVR
KNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDV
LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHEED
GIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV
VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ
PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK
YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSS
VATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLA
EGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPI
LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTA
ITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF
IFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggtgtgggaccggcaaaccaagatggagtatgagtggaaacctgacgagcaagggctt
cagcagatcctgcagctgctcaaggagtcccagtctccagacaccaccatccagaggacc
gtgcaacaaaaactggaacaactcaatcaatatccagattttaacaactacttgattttt
gttcttacaaaattaaaatctgaagatgagcccacaaggtccctgagcggtctgatcttg
aagaataatgtgaaagctcatttccagaacttcccaaacggggtaacggacttcatcaaa
agtgaatgtctaaataatattggtgattcctctcctctgatcagagccactgttggtatt
ttaattacaaccatagcctccaagggagaactgcagaattggcctgatctcttaccaaag
ctctgtagcctgctggattctgaggattacaacacctgtgagggagcatttggtgccctt
cagaagatctgtgaagactctgctgagattttagatagtgatgttttagatcgccctctc
aacatcatgattcccaaatttttacagtttttcaagcacagtagtcccaaaataaggtct
cacgctgtggcgtgtgtcaatcagttcatcatcagtcggactcaagcactcatgctgcac
atcgattctttcatcgagaacctctttgcactggctggtgatgaggaagcagaggtgcgg
aaaaatgtgtgccgggcgctggtgatgctgctggaagtccggatggatcgcctgcttcct
cacatgcataacatagtcgagtacatgctgcaaaggacccaagaccaagatgagaacgtg
gctttggaggcctgtgaattctggctgactttggctgaacagccaatatgcaaagatgta
cttgtgaggcatctgcctaagttgattcctgtgttagtgaatggcatgaagtactcagat
atagatattatcctgcttaagggcgacgtggaagaagatgaaacaatccctgacagcgag
caggacataaggccacggtttcatcgctcaaggacagtggctcagcagcatgaggaggac
ggaattgaagaggaagatgacgacgacgatgaaattgatgatgatgatacaatttctgac
tggaatctgagaaaatgttctgctgctgctctagatgttctcgcaaatgtttatcgtgat
gaactcttgccacacattttgccacttttgaaagagttgcttttccaccatgaatgggtt
gttaaagaatcaggcatcttggttttaggagcaattgctgaaggttgcatgcaaggcatg
attccatacttgcctgagctcattcctcaccttattcagtgcctctctgacaaaaaggct
cttgtgcggtccattacctgctggactcttagccgctatgcacactgggtagtcagccag
ccaccagatacatacctgaagccattaatgacagaattgctgaagcgtatcctggatagc
aacaagagagtacaagaagccgcttgcagtgccttcgctacattagaagaggaggcttgt
acagagcttgtcccataccttgcttatatactcgataccctcgtcttcgccttcagtaaa
taccagcataagaacttgctcattctgtacgatgccattgggacattagcagattccgtg
ggacatcatttaaacaagccagaatatattcagatgctaatgccgcctctgatccagaaa
tggaacatgttaaaggacgaagacaaagatctcttcccgttgcttgagtgcctatcatcc
gttgccacagccttgcaatctggcttccttccctattgtgaacctgtgtatcagcgttgt
gtgaacctagtacagaagactctagcacaagccatgctaaacaatgctcaaccagaacaa
tatgaagctccagataaagattttatgattgtggctcttgacttactcagtggcctggct
gaagggctgggaggcaacatcgagcaactggtagcccgaagtaacatcctaacactaatg
tatcaatgcatgcaggataaaatgcccgaagttcggcagagttctttcgccttattaggt
gatctgactaaagcttgttttcagcatgttaagccctgtatagctgatttcatgccaata
ttgggaacaaatctaaatccagagtttatttcagtctgcaacaatgccacctgggcgatt
ggggaaatatcgattcaaatgggtatagagatgcagccttatattcctatggtgttacac
cagcttgtagaaatcattaacagacccaacacaccaaagacgctgttagagaacacagca
ataacaattggtcgtcttggttacgtttgtcctcaagaggtggcccccatgctacagcag
tttataagaccctggtgtacctctctgagaaacataagagacaatgaagagaaagattca
gcattccgtgggatttgtaccatgatcagtgtgaatcccagtggcgtaatccaagatttt
atatttttttgtgatgccgttgcatcgtggattaacccaaaagatgatctcagagacatg
ttctgtaagatccttcatggatttaaaaaccaagtcggggatgaaaattggaggcgattc
tctgaccagtttcctcttcccttaaaagagcgtcttgcagctttctatggtgtttaa
DBGET
integrated database retrieval system
