Arvicola amphibius (Eurasian water vole): 119809709
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Entry
119809709 CDS
T08327
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119809709 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119809709 (Ddx6)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119809709 (Ddx6)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119809709 (Ddx6)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119809709 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
119809709 (Ddx6)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119809709 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119809709
NCBI-ProteinID:
XP_038178674
LinkDB
All DBs
Position
3:112628942..112668632
Genome browser
AA seq
482 aa
AA seq
DB search
MSTARTENPVIMGLSSQNGQLRGPVKPSGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQS
MTATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSP
IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVS
QICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQ
MIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLM
EELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSC
FYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHR
IGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDE
KP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggccagaacagagaaccctgttataatgggtctgtccagtcagaatggtcag
ctgaggggccctgtgaagcccagtggccctggaggagggggcacacagacacagcaacag
atgaaccagttgaaaaacaccaacacaatcaataacggcactcaacagcaagcacagagc
atgaccgccactattaaacctggtgatgactggaaaaagactttaaaactccctccaaag
gatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgaatttgaagattac
tgtttgaaacgggagttgctaatgggaatttttgaaatgggttgggaaaagccgtctcct
attcaggaggagagcattcccattgctttatctggtagggatatcttagctagagcaaaa
aatggaacaggcaaaagcggtgcctacctcattcccttacttgaacggctggacctgaag
aaggacaatattcaagcaatggtgattgttcccacgagagaacttgctctacaggtcagt
caaatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccacagga
ggaacgaatttacgggatgacataatgaggcttgatgatacagtgcatgtggtgatcgct
acccctggcagaatcctggatcttatcaagaaaggagtagcgaaggttgaccatgtccag
atgatagtattggatgaggcagataaattgttgtcacaggattttgtgcagattatggag
gatattattctcacactacctaaaaataggcagattttactatattctgctactttccct
cttagtgtacaaaagttcatgaattcccatctgcaaaaaccctatgagattaacctgatg
gaggaactaactctgaagggagtaacccagtactacgcatatgtaaccgagcgccaaaaa
gtacactgcctcaacacacttttctccaggcttcagataaaccagtcgatcattttctgc
aactcttctcagagagttgaattactggctaagaagatttctcagctgggttactcttgc
ttctatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgatttccga
aatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatatacaa
gctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatcttcatcgt
attggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatatgat
gatcgcttcaacctgaaaagtattgaggagcaactgggcacagaaattaaacctatccca
agcaacattgacaagagcctgtatgtggcagaataccacagcgagcctgtagaagatgag
aagccttaa
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