Arvicola amphibius (Eurasian water vole): 119809948
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Entry
119809948 CDS
T08327
Symbol
Trpc1
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04360
Axon guidance
aamp04724
Glutamatergic synapse
aamp04726
Serotonergic synapse
aamp04929
GnRH secretion
aamp04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
119809948 (Trpc1)
09154 Digestive system
04972 Pancreatic secretion
119809948 (Trpc1)
09156 Nervous system
04724 Glutamatergic synapse
119809948 (Trpc1)
04726 Serotonergic synapse
119809948 (Trpc1)
09158 Development and regeneration
04360 Axon guidance
119809948 (Trpc1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aamp04040
]
119809948 (Trpc1)
Ion channels [BR:
aamp04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119809948 (Trpc1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
119809948
NCBI-ProteinID:
XP_038179111
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All DBs
Position
3:complement(162100218..162148262)
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AA seq
793 aa
AA seq
DB search
MMAALYPSTDLSGVSSSSLPSSPSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGDY
YMVKKILEENSSGDLNINCVDVLGRNAVTITIENESLDILQLLLDYGCQSADALLVAIDS
EVVGAVDILLNHRPKRSPRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLLK
QDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFEL
SADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTSSDEPLDKRGL
LEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRRKPTCKKIMTVLTVGIF
WPVLSLCYLIAPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNEDKKNTMGPAL
ERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNKF
HDFADRKDWDAFHPTLIAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQDFGKF
LGMFLLVLFSFTIGLTQLYDKGYTPKEQKDCVGIFCEQQSNDTFHSFIGTCFALFWYIFS
LAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKEW
KFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYMISNLSKWVCSHTSKGRVKRQNSLKEW
RNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEIRDLLG
FRTSKYAMFYPRN
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggccctgtacccgagcacggacctctcgggcgtctcctcctcctccctgcct
tcctccccatcctcctcgtcgcccaacgaagtgatggcgctgaaggatgtgcgggaggtg
aaggaggagaacaccctgaatgagaagcttttcttgctggcgtgcgacaagggtgactat
tatatggttaaaaagattttggaggagaacagttcaggtgacttgaacataaattgcgta
gatgtgcttgggagaaatgctgttaccataactattgaaaacgaaagcttggatatacta
cagctgcttttggactacggttgtcagtccgcagatgcacttttggtggccatcgactct
gaagtagtgggagctgtcgatatactacttaatcaccgaccaaaacgatcaccaagacca
actatagtaaaacttatggaacgaattcagaatcctgagtattcaacaacgatggatgtt
gcccctgtcattttagctgctcatcgtaacaactatgaaatccttaccatgcttttaaaa
caggacgtgtctttgcccaagccccatgcagttggctgtgaatgcacgctgtgttctgca
aaaaacaaaaaggacagcctcagacattccaggtttcgtcttgatatctatagatgtctg
gccagcccagctctaataatgttaacagaggaggatccaatcctgagagcatttgaactt
agtgctgacttaaaagaactcagccttgtggaggtggaattcaggaatgattatgaagag
ctagcccgtcagtgcaaaatgtttgctaaagatttgcttgcacaagcccggaattcacgt
gaactggaagttatcttaaaccatacatctagtgatgagcctcttgacaaacggggacta
ctagaagaaagaatgaatttaagtcgtctaaaacttgctatcaaatataaccaaaaggag
tttgtctcccagtcaaattgccagcagttcctgaacaccgtttggtttggacagatgtcg
ggttaccgccgtaagcccacctgtaagaagataatgactgttttgacagttggcatcttc
tggccagttttgtctctatgttatttaatagctcccaaatctcaatttggcagaatcatt
cacacaccttttatgaaatttattattcatggagcatcatatttcacattcttgctgtta
ctaaatctgtactcacttgtctacaatgaagacaagaaaaatacaatggggccagccctt
gagagaatagactaccttctcatactgtggattattgggatgatctggtcggacattaag
agactctggtatgaagggctggaagactttttagaagagtcgcgtaatcagctcagcttt
gtcatgaattcactctacttggcaacctttgctctcaaagtggtggctcacaacaagttt
catgactttgctgaccggaaggactgggatgcattccaccctacacttatagcagaaggc
ctttttgcatttgcaaacgttttgagttaccttcggctcttttttatgtatacaaccagc
tcgattttgggtccactgcagatttcgatgggacagatgttacaagattttgggaaattt
ctggggatgttccttcttgttctattttccttcacaattggactgacacaactctatgac
aaggggtacactcccaaagagcagaaggactgtgttggcatcttctgtgaacaacaaagc
aacgacacctttcactcgttcattggcacctgctttgctttgttctggtacattttctcc
ttagcacatgtggccatctttgtcacgaggtttagctatggagaagaactgcagtctttc
gttggagctgtgattgttggaacttacaacgtcgtggttgtgattgtgctcacgaagctg
ctggtggccatgcttcataagagctttcagttgatagcaaatcatgaggataaagaatgg
aagtttgctcgagcaaagctatggcttagctactttgatgacaaatgtacacttccgcca
cctttcaacattattccttcaccaaagactatctgctatatgatcagtaacctcagtaag
tgggtttgctcgcacacatccaaaggcagggtcaagcggcaaaacagtttaaaggagtgg
agaaacttgaagcaaaagagagatgagaactaccagaaagtgatgtgctgcctagtgcat
cgttacctgacatctatgcgacagaagatgcagagcacagaccaggccactgtggagaac
ctcaatgaactgcgccaagatctgtcaaaattccgaaatgaaataagggatttgcttggc
tttcggacttctaaatatgctatgttttatccaagaaattaa
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