Arvicola amphibius (Eurasian water vole): 119810037
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Entry
119810037 CDS
T08327
Symbol
Smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03082
ATP-dependent chromatin remodeling
aamp04714
Thermogenesis
aamp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119810037 (Smarcc1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
119810037 (Smarcc1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
119810037 (Smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamp03021
]
119810037 (Smarcc1)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119810037 (Smarcc1)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119810037 (Smarcc1)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119810037 (Smarcc1)
PBAF complex
119810037 (Smarcc1)
GBAF(ncBAF) complex
119810037 (Smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT_2
Chromo
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
119810037
NCBI-ProteinID:
XP_038179259
LinkDB
All DBs
Position
3:175816954..175931625
Genome browser
AA seq
1102 aa
AA seq
DB search
MAAAAGGGPGAAAGAVGAGGAAAASGLAVYRRKDGGPASKFWESPDTVSQLDSVRVWLGK
HYKKYVHADAPTNKALAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHI
LGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKLA
NKLKDIIKRHQGTFTDEKSKASHHIYPCPSSQEDEDWLRPVMKKDKQVLVHWGFYPDSYD
TWVHCNDVDAEIEDPPIPEKPWKVHVKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRIS
TKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKED
DEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEEAVTTGGK
EDEDPSKGDPSRSVDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNKS
KTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDP
ESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFGL
RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEE
FSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGSEEEKM
ETDSDGQQLEKAENKVDNESHEGDKIQDGEDEKSSEKEQDSEVSEDIKPEEKENDEHKEL
TDPCKERESDTGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLVE
TQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQQ
QHGQNPQQAHQHSGGPGLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGPG
SMMPGQPMPGRMIPTVAANIHPTGSGPAPPGMPPMPGNILGPRVPLTAPNGMYPPPPQQQ
PPPSADGVPPPPAPGPPTSATP
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcagcgggcggcggtccgggagcggcagcaggcgccgtgggtgcagggggt
gcggcggcggcctcgggcctggccgtgtaccggcggaaggacgggggccctgccagcaag
ttttgggaaagcccggatacggtgtcccagctggattcggtgcgagtctggctgggcaag
cactacaagaagtatgttcatgcagatgctcctaccaataaagcgctggctggactggtg
gtacagcttcttcagttccaagaagatgcctttgggaagcatgtcaccaacccggctttc
accaaactacctgcaaaatgttttatggatttcaaagctggaggcaccttgtgtcacatt
cttggggctgcttacaagtacaaaaatgaacaggggtggcgcagatttgatcttcagaat
ccatcccgaatggatcgtaatgttgaaatgttcatgaacattgaaaaaacgttggtacaa
aacaattgtctgactagacccaacatctacctcattccagacattgatttgaagttggct
aataaattgaaagatatcatcaaacggcaccaggggacatttactgatgaaaagtcaaaa
gcttcccaccatatttatccatgtccttcctcacaagaggatgaagattggttgagacca
gtgatgaaaaaggacaagcaggtgttggtgcactggggcttttacccagacagctatgac
acttgggtccattgtaatgatgttgatgctgaaattgaagatccaccaattccagaaaag
ccatggaaggttcatgtaaaatggattttggacactgacgttttcaatgagtggatgaat
gaagaggactatgaagtggacgagaacagaaagccagtgagttttcgtcagcgaatttca
acaaagaatgaagagccagtcagaagtccagagaggagagatcgaaaagcatcagctaat
gcccgaaagaggaaacattccccctcccctcctcctcccacacccacagaatcccggaaa
aagagtgggaagaaaggacaagctagcctttatgggaagcgtagaagtcagaaagaagat
gatgaacaagaagatcttaccaaggacatggaagacccaacacctgtaccaaatatagaa
gaagtggtgctccctaagaacgtaaacccaaagaaagacagtgaaaacacacctgttaaa
ggaggcacagtggcagatctagatgagcaggatgaagaagcagttacaacaggaggaaag
gaagatgaggatcctagcaaaggtgatcctagtcggtctgttgacccaggtgaagataat
gtgacagaacagaccaatcacatcattattcccagctatgcgtcctggtttgattataac
tgtattcatgtgattgaacggcgtgctcttcctgagttttttaatgggaaaaacaaatcc
aagactccagaaatatatttggcatatcgaaattttatgattgacacataccgtctaaac
ccccaagaatatttaaccagtactgcttgtcggagaaacctgactggagatgtgtgtgct
gtgatgagggttcatgccttcttagagcagtggggtcttgttaactaccaagttgatcct
gaaagtcgacccatggcaatgggccctcctcctactcctcatttcaatgtgttggctgac
acaccttcagggcttgttcctctgcatcttcggtcacctcaggtccctgctgctcagcag
atgttaaactttcctgagaagaacaaggaaaaaccaattgatttgcagaactttggtctt
cgaactgacatttactccaagaaaacactggcaaagagcaaaggtgctagtgccggaagg
gagtggaccgagcaggagactctccttctcctggaggccctggagatgtacaaggatgat
tggaataaagtctcagaacatgttggaagtcgtactcaggatgaatgcatcctccacttt
ttgaggcttcccattgaggacccataccttgaaaattcagatgcttcccttgggccgcta
gcttaccagcctgtccctttcagccagtcagggaacccagtgatgagtaccgttgctttt
ttagcatctgtagttgaccctcgtgtggcctctgctgcagcaaaagcagctttggaggag
ttttctcgggtccgagaagaagtacccctggaattagttgaagcgcatgtcaaaaaggta
caagaggccgcaagagcctctgggaaagtggaccccacctatggcttggaaagcagctgt
attgcaggcacaggtcctgatgagccagagaagcttgaaggatctgaagaagaaaagatg
gaaacagattccgatggtcagcagcttgaaaaggcagaaaacaaagtggacaatgaatcg
catgaaggtgataaaatccaggatggagaagatgagaaaagcagtgagaaggaacaagac
agtgaagttagtgaggatatcaaaccagaagaaaaggagaatgacgagcacaaggaactc
actgatccatgtaaagaaagagaaagcgataccgggaagaagaaagtggaacacgagatt
tctgagggaaatgtggccacagccgcagcagctgctctcgcctcagctgctaccaaagcc
aagcacctggctgctgtggaagagagaaaaatcaagtccctggtagcgctcctggttgag
acacagatgaagaaactagagatcaaacttcgacattttgaagagctggagactattatg
gacagagagaaagaggctctagaacagcagagacagcagttgcttactgagcgccagaac
ttccacatggaacagttgaaatacgctgagctacgagctcgacaacaaatggaacagcag
cagcatggccagaaccctcagcaagcacaccaacactcaggaggacctggtctggccccg
cttggagcagcagggcaccctggcatgatgcctcatcagcagcccccaccctaccctctg
atgcaccatcagatgccaccaccacatcctccccagccaggtcagataccaggccctggc
tccatgatgcctgggcagcccatgccaggccgcatgattcctactgtggcagccaacatc
catcctacggggagtggccctgcccctcccggtatgcctccaatgcccggaaacatctta
ggacccagggtacccctcacagcaccaaacggcatgtatcctcctccaccacagcagcag
ccacctccatctgcagacggggtccctccacctcctgctccaggcccaccaacctcggcc
actccttag
DBGET
integrated database retrieval system
