Arvicola amphibius (Eurasian water vole): 119810354
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Entry
119810354 CDS
T08327
Symbol
Col7a1
Name
(RefSeq) collagen alpha-1(VII) chain
KO
K16628
collagen type VII alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04382
Cornified envelope formation
aamp04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
119810354 (Col7a1)
09158 Development and regeneration
04382 Cornified envelope formation
119810354 (Col7a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
fn3
VWA
Pur_ac_phosph_N
Kunitz_BPTI
VWA_2
Ig_DSCAM-DSCAML_C
Motif
Other DBs
NCBI-GeneID:
119810354
NCBI-ProteinID:
XP_038179723
LinkDB
All DBs
Position
3:175291466..175323445
Genome browser
AA seq
2947 aa
AA seq
DB search
MRLRLLVAALCAAEVLVGAPGVWAQPRDRVTCTRLYAADIVFLLDGSSSIGRSNFREVRG
FLEGLVLPFSGAASAQGIRFATVQYSDDPQTEFGLDALSSGGDTVRAIRELSYKGGNTRT
GAALRHVSDHVFLPHLTRPGIPKVCILITDGKSQDLVDPAAQKLKEQGVKLFAVGIKNAD
PEELKRVASQPTSDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPPDGTPSGPRDLV
LSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNVPAGETSMRLQGLRP
LTEYQVTVVALYANSIGEAVSGTARTTAEEGLELSIQNITSYSLLVAWRRVPGATGYRVA
WRDLRGGATQQQDLSPGQGSMLLYHLEPGTDYEVTVSTLFGHSVGPATSLTARTDSSVEQ
TLHPVILSPTSILLSWNLVPEARGYRLEWHRESGLEAPQKVVLPSDVTRHQLDELQPGTA
YRFTLYTLLEGREVATPATVVPTGPEQPASEVMNLRATELPGHRVRVSWHPVPGATEYRV
TVRSSQGVERTLLLPGSQTTFDLDDVRAGISYTVRVSARVGTHEGGASILTIRRDPEAQL
TVPGLRVVASDATRIRVVWGPVPGASGFRISWRTGSGPESSQTLTPDSTTTDILGLQPGT
SYHVAVSALRGREEGPPVVIVARTDPLSPVRRVHLTQSGSSSISIAWTGVPGATVYRVSW
HSGHGPEKSQLVSGEATVADIDGLEPDTEYTVHVRTHVAGVDGPPASVVVRTAPEPVGSV
SKLQILNASSDVLRVTWVGVPGATAYRLAWGRSEGGPMRQQILPGNKDSAEIRDLEGGVS
YSVRVTALVGDREGAPVSIVVTTPPEAPTPLESLQVVQRGAHSLRLRWEPVPGALGFRLH
WQPEGGQEQSLILPPESNSYNLDGLEPATLYHVWLSVLGQTGEGPPRKVSARTEPSRVLS
TDLRVVDTSIDSVTLAWTPVPEASSYILSWRPLRGTGQEVPGVPQTLPGTSSSHRVTGLD
PGVSYVFSLAPIQRGTRGPEVSVTQKPVCPHGQVDVVFLLRTTRDNAHNAEVFRRVLERL
VSALGPLGPQAAQVGLLSYSHRPSPLFPLNSSHDLGIILQKIRDIPYVDPSGNNLGTAVI
TAHSHLLAPNAPGRRQQVPGVMVLLVDEPLRGDIFSPIREVQASGLKVMILGMAGADPEQ
LRRLAQGTNPIQNFFAMDNGPSLDQAVSDLAVALCQAAVTIQPQLEPCAVHCPQGQKGEP
GGPGLQGQAGPPGPPGLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLTGVPGSP
GVKGSPGWPGPPGEPGERGPRGPKGEPGEPGQVTGGEGPGLPGKKGDPGPSGPPGPRGSS
GQPGPRGPPGLPGTSVKGDKGDRGERGPPGPGIGGTGQGEPGLPGLPGSPGPQGPAGRTG
DKGEKGDCEDGSPGLPGQPGAPGEPGLRGAPGVTGSKGDRGQTGTPGEPGEKGERGPPGA
VGPQGLPGVAGHPGVEGPEGPPGPAGRRGEKGEPGRPGDPAVGPGGAGVKGEKGDAGLPG
PRGAAGTKGEQGPPGLALPGDPGPKGDRGDRGPIGLTGRAGPTGDSGPPGEKGDPGRPGP
SGPVGPRGRDGEAGEKGDEGIPGDPGLPGKAGERGPRGAPGARGPVGEKGEQGDPGEDGR
NGSPGPSGPKGDRGEPGPPGPPGRLVDAGIGSGDKGEPGQEGPRGPKGDPGPPGASGERG
IDGLRGPPGPQGDPGVRGPAGDKGDRGPPGLDGRNGLDGKPGALGPPGPHGASGKAGDPG
RDGLPGLRGEHGPTGQPGPPGPPGVPGKAGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSG
APGREGHDGAKGERGAPGDPGLQGPPGPPGQVGPPGQGFPGVPGSVGPKGDRGETGSKGE
QGLPGERGLRGEPGSLPNAERLLETAGIKVSALRDIVETWDESSGGFLSVPERRPGPKGD
PGERGPPGKEGSIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPG
LPGRAGGVGEAGRPGERGERGEKGDRGEQGRDGLPGLPGPPGPPGPKVAVEDPGTGPSRE
QGPPGLKGAKGEPGSDGDRGPKGDRGVPGIKGDQGEPGKRGHDGSPGLPGERGVAGPEGK
PGLQGPRGTPGPAGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPTGAV
GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGTSGKDGDRGGPGVPGLPGSPGPV
GPKGEPGPVGAPGQAVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGR
AGEPGDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPTGPPGVKGDLGSPGAPGAPGVVGFP
GQTGPRGEMGQPGPVGERGLAGPPGREGAPGPLGPPGPPGLAGAPGASGLKGDKGDPGVG
LPGPRGERGEPGVRGEDGHPGQEGPRGLMGPPGSRGDRGEKGDAGTAGLKGDKGDSAVIE
GPPGPRGAKGDMGERGPRGADGDKGPRGDSGNPGDKGSKGEPGDKGSTGSIGVRGLMGPK
GEPGAAGIPGEPGTPGKDGAPGFQGVKGDIGFTGPRGLKGERGMKGACGLDGEKGDKGEA
GFPGRPGLAGRKGDAGEPGMPGQAGAPGKEGLIGPKGDRGFDGQSGPKGDQGEKGERGPP
GVGGFPGPKGNDGSSGPPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERG
EQGRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPSYAADTAGP
QLHRVPVLRVSHVEEEGQVPPEDDDDFSEYSVYSVEDYQDPEVPWDGNGDSKGWDQKGSD
PCSLPLDEGSCTAYTLRWYHRAVPGGTACHPFVYGGCGGNANRFGTREACERRCPPQVVH
SQKTGAA
NT seq
8844 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgcggctcctggtcgctgcgctctgcgctgcggaggtcctggtgggggcgcct
ggagtatgggcccagcccagagatagagtgacctgcacgcgcctttacgccgctgacatc
gtgttcttactcgatggctcttcatccattggccgcagcaacttccgcgaagtgcgagga
ttcctggaggggctggtgctgcctttttcaggggcagccagtgcgcagggtatccgattt
gccacggtgcagtacagtgatgacccacagacagaatttggtctggatgcactcagctct
ggaggtgataccgtccgcgccatccgggaactcagctataagggtggcaacacacgcaca
ggggctgctcttcgtcatgtttctgaccatgtctttttgccccatctaacacgacctggc
atacccaaggtctgtatcctgatcacggatgggaagtcccaagacttagtggacccagct
gcccaaaaactgaaggagcagggagtcaagctgtttgctgtgggaatcaagaatgctgac
cctgaggagctgaagcgggttgcctcacagccaaccagtgacttcttcttctttgtcaac
gacttcagcatcttgaggacactgctgcccctcatttctcggagggtgtgcacgactgct
ggtggtgtgcctgtgaccttacctcctgatggcactccgtctgggccccgggacctggtg
ctgtctgagccaagtagtcagtccttgcgagtacagtggacagcagctagtggccctgtg
actggctacaaggttcaatacacccctctgacagggctgggacagccactgccaagtgag
cgacaggaggtgaacgtcccagctggtgaaaccagcatgcgactacagggtctccggcca
ctaactgaataccaagtgactgtggtcgccctctacgccaacagcatcggggaggccgtg
agtggaacagctcggaccactgccgaggaagggctggagttgagcatccagaacatcaca
tcctacagccttctggtggcctggaggagagtgccaggtgctactggctaccgtgtggca
tggcgagacctccgtggcggggcaacacagcagcaggacctgagccctggacaggggtca
atgcttttatatcacttggagcctggcacagactatgaggtgactgtgagcaccctattt
ggccacagcgtggggcccgccacttctctgactgcccgcactgactcctcggttgagcag
accctgcaccctgtcatcttgagccccacatccatcctcctttcctggaacttggtgcct
gaggcccgtggctaccggttggagtggcatcgtgaaagtggcttggaagcaccacagaaa
gtggtcctgccctctgatgtgacccgccaccagctggatgagttgcagccgggcactgca
tatcgcttcacgctctacactctgttggagggccgggaggtggccactcctgcgaccgtc
gttcctactgggccagagcagccagcgagcgaggtgatgaacttacgagccacagaactg
cccgggcaccgggtgcgagtgtcttggcacccggtccccggtgccaccgagtaccgtgtc
actgtccgcagtagccagggagttgagcgaaccctgttgctccctgggagtcagacaacc
tttgacttagatgatgttcgagctgggatcagctacacagtgcgggtgtctgctcgagtg
ggcactcatgagggcggtgccagcatcctgaccatccgcagagatccagaagcccaacta
actgttccaggactgcgggttgtggcgtcagatgcaacaagaattagagtggtctgggga
cctgtccctggggccagtggatttcggattagctggaggacaggcagtggtccagagtcc
agtcagacactgaccccagactcgaccaccacagacatcctggggctgcagcctggaacc
tcttatcacgtggctgtatcagcacttcgagggagagaggagggcccccctgtggtcatc
gtggctcgaactgacccactgagcccagtgaggagagtccatttgactcagtctggcagc
tcatccatcagcattgcctggaccggtgttcctggtgccacagtatacagggtttcctgg
cactcaggccatggtccagagaaatctcagttggtttctggggaagccacggtggccgac
atcgatgggctggagccagacacggagtacacagtacatgtgagaacccatgttgctggt
gtggatggcccccctgcctctgtggttgtgaggactgcccctgagcctgtgggcagtgtg
tccaaactgcaaatccttaatgcttccagtgatgttctgcgggtcacttgggtaggagtc
cctggagccacagcctatagactggcatggggacggagtgaaggcggccctatgaggcag
cagatactcccaggaaacaaagactctgccgagatacgggatctcgaaggtggagtcagc
tactcagtgagagtgacggctctggttggggaccgagagggcgcaccagtttccattgtc
gtcaccacaccgcctgaggctccaacacctctggagagccttcaagtagtgcagcgagga
gcgcattctttgaggctgcgctgggagccggtacctggagcactgggcttccgtctgcat
tggcaacctgagggcggccaggagcagtccctgatcttgccacctgagtctaacagctac
aacctggatggactggagccagccaccctgtaccatgtatggctgagtgttctggggcaa
acgggagaagggccccctaggaaggtgtctgcacgcactgagccctctcgtgtcctgagc
actgacctccgtgtggtggacacctctattgactcagtgactttggcctggaccccagtc
cctgaggcatccagctatatcttgtcctggcggcccctcagaggaactggccaggaagtg
cccggggttccacagacactgccagggacctcaagctcccatagggtgacaggcctagac
cctggtgtttcctatgtcttctctctggcacctatccagaggggtacacgaggtcctgaa
gtctctgtcacacaaaagccagtgtgtccccatggccaggtggacgtggtgttcctgtta
cgtaccactcgagacaatgctcacaatgcagaggttttcaggagggtcctggagaggctg
gtgtctgcactcgggcctcttggtccacaggctgcccaggttggcctgctgtcctatagt
caccggccctccccattattccccctgaatagttcccatgatcttggcatcatcttgcaa
aagatccgggatatcccctatgtggacccaagcggaaacaacttaggcacagccgtgatc
acagctcacagccacctcctggcacccaacgctcctggtcgccgtcagcaagtgccaggg
gtgatggtcctgttagtggatgagccactgagaggggacatattcagccccattcgtgag
gtccaggcttctgggctcaaggtgatgattttgggtatggcgggagctgacccagagcag
ctgcgacgcttggcacaaggcacgaaccccatccagaacttctttgccatggataacggc
ccaagcttggaccaagcagtcagtgatctggcagtagccctgtgtcaggcagctgtgacc
atacagccacaactggagccttgtgctgtgcattgtccacagggccagaagggggagcct
ggaggaccgggactgcaaggacaagctggacctccaggtccccccggtctcccgggcagg
accggtgctcctggcccacagggtccccctggaagtacccaggcaaaaggcgagaggggc
tttcctggcccagaagggcctccaggcagtcctggcctcactggcgttcctgggtctcct
ggcgttaagggctctcccgggtggcctggccctcctggggaaccgggagagcgagggcct
cgaggcccaaagggggagccgggggagcctgggcaagtcactggaggtgaaggtccagga
cttcctggaaagaaaggggaccctggaccttcgggaccccctggacctcgtggctcttca
gggcaaccaggaccccgtggtcctccaggacttccgggaacatccgtgaagggtgacaaa
ggtgatcgtggggaacggggtcccccaggaccaggtattggtggcactggacaaggcgag
cctggacttccgggtcttcctggaagccctggaccccaaggcccagctggccgcactgga
gataagggagagaagggtgactgtgaggatggatccccaggccttccaggacaacctggg
gccccaggtgaaccgggcctacggggagctcctggagttactgggtccaaaggtgaccgg
ggacagacagggaccccaggggagcctggagaaaagggtgaacggggaccacctggtgca
gtgggaccccagggactccccggggttgctggacatcctggagtggaaggtcctgagggg
ccaccaggacctgctggccgcagaggagaaaagggggagcctggacgccctggggaccct
gcagtgggtcctggtggtgctggagtcaaaggagaaaagggagatgctggactccctggg
cccagaggagctgctggaaccaaaggggaacaaggcccacctggattggctcttcctgga
gaccctgggcccaaaggagaccgtggagaccggggtcccattggcctcactggcagagca
ggacccacaggcgactcggggcctcctggagagaagggagatcctgggagacctggaccc
tcaggacctgtcggcccccgagggagagatggtgaagctggagagaaaggcgacgagggt
atcccgggtgacccaggtttgcctggaaaagccggcgagcgtggccctcggggtgcccct
ggggcccgggggcctgtgggtgagaaaggcgagcagggagaccctggagaagatggacgg
aatggtagccctggaccatctggacccaagggtgaccgtggggagccgggccccccaggt
ccccctggacggctggtggatgcaggaattggatctggagacaagggagagcctggacag
gaaggtcctcgaggacccaagggtgatcctggcccccctggagcctctggagaaaggggc
attgacgggcttcggggaccccctggcccacagggagacccaggtgtccgaggccctgca
ggagacaagggtgatcggggtcccccagggctggatggccggaatgggctggatgggaaa
ccaggtgcacttggccccccagggccacatggtgcttcaggcaaagccggagaccctggg
agagatgggcttccaggccttcgaggagaacacggccccactggccaacctggtccccct
ggcccccctggagtacctggaaaggcaggcgaggatggcaaacctggcttaaatgggaaa
aacggagaacctggagaccctggagaagatgggaggaagggggaaaagggagattctggt
gcccctggaagagaaggtcatgatggtgccaagggtgaacgtggagctcctggtgatcct
ggactccagggtcctccaggtcccccaggacaggtcggtcctcctggccagggtttccct
ggtgtcccaggaagtgtgggtcctaagggtgaccgtggagagactggatccaaaggggaa
cagggccttcctggagaacgtggcctacgaggagaacctgggagcttgccgaatgcagag
aggttgctggaaactgctggcatcaaggtgtcagccctgcgggacattgtggagacctgg
gatgaaagctctggtggcttcctgtctgtgcctgagcggagacctggccccaagggagac
cccggtgagcgaggccctccgggcaaggagggctccattggttttcctggagaacgcggg
ctgaagggagatcgtggagatcctggccctcaggggcctcccggtctggcccttggggag
aggggcccacctggaccacctggccttgctggggaacctggaaagcctggcattcctgga
ctcccaggccgggctggtggtgtgggggaggcaggacggccaggagagaggggagaacga
ggagagaaaggagaccgtggagaacagggcagagatggccttcctggcctccctggaccg
cctggccctcctggccccaaggtggctgtcgaggacccaggtactggaccctctagagaa
caaggaccccctggactcaaaggtgctaagggggagccaggcagtgatggtgaccgtgga
cccaaaggagacaggggtgtaccaggcatcaaaggagaccaaggagagcctgggaagcga
ggtcatgatggcagcccgggtctcccgggagagcgtggtgtggctgggcctgaagggaag
ccgggtctgcagggcccaagggggacccctggcccagcgggtggccatggagaccccgga
ccacctggtgccccgggtcttgctggccctgcaggaccccaggggccttcaggcctgaag
ggggagcctggagaaacaggacccccgggacggggtctgcctggacctactggagctgtg
ggacttcctggccctcctggcccttcaggccttgtgggtccacaagggtcaccaggtttg
cccggacaagtgggggagacagggaagccaggacccccaggtcgtgatggtaccagcgga
aaggatggagacaggggaggtcctggtgtgccagggttgccaggttcacctggccctgtt
ggacctaaaggagaacctgggcctgtgggggcccctggacaggcggtggttgggccccct
ggagcaaaaggcgagaagggagccccaggagaccttgctggagccctgctgggtgagccg
ggagccaaaggtgaccgaggactgccaggaccacggggtgagaaaggtgaagctggtcgt
gcaggagagcctggagaccctggagaagatggtcaaaaaggggctccagggctcaaaggt
ctcaagggtgagccaggaattggggttcagggcccccctgggccaactggtcctccaggt
gtgaagggggacttgggctcccctggtgcccccggtgctcctggtgtcgttggattccct
ggtcagacaggacctcgaggagagatgggccagccagggcctgtgggggagcggggtctg
gcaggtcctccggggagagaaggcgccccaggccccttggggccacctggaccaccaggg
ttagcgggagcacctggcgcctctggactcaaaggagacaagggagaccccggagtaggg
ctgcctgggccccgaggcgagcgtggtgagccaggtgtccggggggaagatggccacccc
ggccaggaaggacctcggggactcatgggacctcctggcagccggggagaccgaggggag
aagggtgacgctggaaccgcagggctaaagggtgacaagggtgactcagctgtgattgag
gggcctccagggccgcgaggtgccaaaggagacatgggtgaacgaggccctcgaggcgca
gatggtgacaaaggacctcggggagacagtgggaatcctggcgacaagggctccaaagga
gagcctggtgacaaaggctcaactggatcaattggagttcgaggcctcatgggacccaag
ggtgagccaggagctgcagggatcccgggtgagccgggaaccccaggaaaggatggagcc
cctggtttccaaggagtcaaaggagatattggcttcacgggtccccggggcctcaagggc
gaaagaggaatgaagggagcctgtggccttgatggagaaaaaggagataagggagaagct
ggttttcccggccgccctggattggcaggacggaaaggagacgcaggggagcctggtatg
cccggtcaggccggggctcctggcaaagagggtctgattggtcccaagggcgacagaggc
tttgatgggcagtcaggacccaagggtgaccaaggcgagaaaggggagagggggccccca
ggagttgggggcttcccaggtcccaaagggaatgatggctctagtggtcccccagggcca
cctggtggggttggtcccaaaggccctgaaggacttcagggtcagaagggtgagcgaggt
ccccctggagagagcgtggtgggggctcctggtgctcctggtacccccggtgagagaggg
gagcaggggcgaccaggacctgctggccctcgtggggagaaaggagaagctgcactgact
gaggatgacattcggggctttgtgcgtcaggagatgagtcagcattgtgcctgccaggga
cagtttattgcatctggatcacgacccctccccagctatgctgcggatacagctggcccc
cagctccaccgtgtgcctgtgctccgggtctctcatgtagaggaggaaggccaggtaccc
cctgaagatgacgacgacttctctgagtactcggtgtattctgtggaagactaccaggac
cctgaggttccttgggatggcaacggtgatagcaagggctgggaccagaaaggttcagac
ccctgctccctaccactggatgagggctcctgtactgcctacaccctgcgctggtaccat
cgggctgttcctggtggcacagcctgtcatccctttgtctacggtggctgcggagggaat
gccaaccgttttggaacccgtgaggcatgtgagcgccgctgcccaccccaagtggtccac
agccagaaaacaggtgctgcctag
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integrated database retrieval system
