Arvicola amphibius (Eurasian water vole): 119811145
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Entry
119811145 CDS
T08327
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04612
Antigen processing and presentation
aamp05145
Toxoplasmosis
aamp05152
Tuberculosis
aamp05164
Influenza A
aamp05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
119811145 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
119811145 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
119811145 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
119811145 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
119811145 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
aamp01001
]
119811145 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
aamp04054
]
119811145 (Ciita)
Enzymes [BR:
aamp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
119811145 (Ciita)
Protein kinases [BR:
aamp01001
]
Serine/threonine kinases: Other
TAF1 family
119811145 (Ciita)
Pattern recognition receptors [BR:
aamp04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119811145 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
119811145
NCBI-ProteinID:
XP_038180653
LinkDB
All DBs
Position
4:98850059..98902712
Genome browser
AA seq
1213 aa
AA seq
DB search
MNHFQAILAEVRMLLSSQQPRQVQALLDGLLEEELLSKEYHRALLHEPDGEALARKISLT
LLEKGGLGLACSSWVRSRLQDPVVERATSYRDHGGHSLCATMELGLPEGSYLELLNSDAD
PLHLYHLYDQMDLAGEEIELSSEPDTDTINCDQFSKLLQDMEGDEETREAYANIAELDQY
VFQDTQLEGLSKDLFIEHIGAEEGFGESMEVSGEAGQRPQKRRPTEEHAMDSKHRKLAEP
SSMPILTGSFLMGPASLSTLPYLSPALSNQEPVSSHLYLEEAVQTSGPPPRSSLNCRDLP
IRHVQLLPTLPQGLLQISGAGTGLSSVLIYHGEMAQVNQAVPSGSPTVPSLPKSPGRPGS
TSPFAPSAADLPSMPEPALTSRVNETENITSPSPCQEGPESSIKLPKWPESVERFQHSLQ
DKYQMEPESLSSPLVTMELVRARLERGSNKSQERELATPDWTERQLAHSGLAEVLQVVGS
RRWPRETQVVAVLAKAGQGKSHWARMVSQTWARGQLPQYDFVFYVPCHCLDRPGDSYHLR
DLLCPPSLQPLVMDDEVSSHIVRQPDRVLLILDAFEELEAQDGLLHGPCGPLPPEPCSFR
GLLAGLFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSIKQAQTYMRHYFENSG
AAGDQDKALGLLERQPFLLSHSHSPALCRAVCQLSKALLEQGTETQLPGTLTGLYVSLLG
PAVRDSPPGALTELAKLAWELGRRHQSTLQKTQLLSVEVRTWAVTQGLVQPALGTTEDQL
AFSSFLLQCFLGAVWLAQCDEIRDKELPQYLALTPRKKRPYDNWLEGVPRFLAGLVFQPR
THCLGALVESAVTERKRKVLTRYLKRLQLGTLRAGRLLELLHCAHETQEPGIWEHVTHQL
PGHLSFLGTRLTPPDSHMLGRALETASQDFSLDLRQTGIEPSGLGDLVGLSCVTSFRASL
SDTMVLWESLRQKGESQLLQAAEEKFTIEPFKAKSPKDVEDLDSLVQTQRLRNPSEDAAP
DLPAIRDLKKLEFALGPVLGPQAFPTLAKILPVFSSLQHLDLDSLSENKIGDEGVSKLST
TFPQLKVLETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNNCIRDAGAKSLAQVLP
DMVSLRVCPVQQVHGCRCPAAGLQPSEVPSSGNTGNVDTYYPLWGSGTLAAAGFPNQPEM
TLLCSGQARTRGH
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccattctggctgaggtgcggatgctgctctccagtcagcagccc
aggcaggttcaggccctcctggacggcctgctggaggaagagctgctctccaaggaatac
caccgtgccctgctccatgagcctgacggcgaagctctggcccggaagatttccctgacc
ctgctggagaaagggggcttaggcttggcttgctcgagctgggtccgcagcaggctgcag
gacccagtggtagagagggccaccagctacagggaccatggaggccatagtctgtgtgcc
accatggaattggggcttccagagggcagctacctggagctacttaacagcgatgctgac
cccctccacctctaccacttgtatgaccagatggacctggctggggaggagatcgagctc
agctcagagccagacacagacaccatcaactgtgaccagttcagcaagctgttgcaggac
atggaaggggatgaagagaccagggaggcctatgccaacatcgcggaactggatcagtat
gtgtttcaggacacacagctggagggcctgagcaaggacctcttcatagagcacattgga
gcagaggaaggctttggtgagagcatggaagtttctggagaagcaggacagaggccccag
aagagacgccccacagaagagcacgctatggactccaagcacaggaagctagccgagccc
tcttcaatgcccatattgactggcagcttcctgatgggaccagcaagcctctccaccttg
ccttacttatcacctgctctatccaatcaagagccagtgtccagccatttatacctagag
gaagctgttcagacatctggccccccccctaggtcctcactgaactgtcgggatctcccc
atcagacacgtccagcttcttccgactctgccccagggacttttgcaaatctcaggggct
ggcacaggtctctccagtgttctgatctaccatggtgaaatggcccaagtcaaccaagca
gtcccttcaggcagccccactgtccccagcctccccaaatccccagggcggccaggctcc
accagcccctttgcaccatctgcagcagacctgcccagtatgcctgaacctgcgctgacc
tcccgtgttaatgagacggagaacataacatccccctccccatgccaggaaggtcccgag
tcttccatcaagcttccaaaatggcctgagtctgtggagcggttccagcactccctgcag
gacaagtaccagatggagcctgagagcctgagcagtcccctggtaaccatggagctggta
cgggccaggttggagagaggcagcaacaagagccaggaaagggagctagccactccagac
tggacagagcgccagctagcccatagtggcctagctgaggtgcttcaggttgtcggcagc
cgccggtggccacgagagacacaggtggtcgctgtgctggccaaggctggccaaggcaaa
agccactgggctcggatggtgagtcagacctgggcccgtggccagttgccacaatacgac
tttgtcttctatgtcccttgtcactgcttggatcgtccaggcgactcctaccacctccgc
gatctgctctgtcccccaagcctgcagccactggtcatggatgatgaggtctcaagtcat
attgtgaggcaaccagaccgtgtcctgctcattctagatgcttttgaggagctagaggcc
caagatggtctcctgcacggaccatgtggacctctgcccccagagccctgctccttccgg
ggactgctagctgggctgttccagaggaagctgctgcgcggctgtaccctgctcctcacg
gcacggccccggggccgcctggctcagagcctgagcaaggcagacgccatcttcgaggtg
cccagcttctctattaaacaggcccagacttatatgaggcactactttgagaactcgggg
gcagcaggggaccaagacaaggccctgggcctcctggagcgccagccctttctcctcagc
cacagccacagtcctgctctgtgcagggccgtgtgccagctctccaaggccctgctggaa
cagggcacggagacccagctgcctggtacacttacaggactctatgtcagcctgctaggc
ccggcagtccgagacagtcctccgggggccttaactgagctggccaaactggcctgggag
ctgggccgcagacaccaaagcaccttgcaaaagactcagttactatccgtggaggtgagg
acctgggcagtgacccaaggcttggtgcagcccgccctggggaccacagaggaccagctg
gccttctctagttttctgctacagtgcttcctgggtgctgtgtggctggcacagtgtgat
gaaatcagagacaaggagctgccacagtacctggccctgaccccgaggaagaagagaccc
tatgacaactggctggagggtgtaccacggtttctggctggattggttttccagccgcga
acccactgcctgggagctctggtggagtctgcagtgacagaaaggaaacggaaggttctt
acccggtacctgaagcgcctacagctggggacgctgcgtgctggccgactgctggagctg
ctacattgtgcccacgagacacaggaacctgggatttgggagcatgtaacccaccagctc
cctgggcatctctccttcctgggcacccggctcacacccccagattcgcacatgctgggc
agggccctagagacggccagccaggacttctccctggaccttcgtcagactggcattgag
ccctctggactgggggacctcgtgggactcagctgtgtcaccagtttcagggcctccttg
agtgacacaatggtgctatgggagtccctacggcagaagggagagtcccagctactccag
gcagcagaggaaaaattcaccattgagccattcaaggccaagtctccgaaggatgtggaa
gacctggacagcttggtgcagacccagaggctgagaaacccctcggaggatgcagctcca
gatcttcctgccatccgggaccttaagaagctagagtttgcgttgggcccggtattgggc
ccccaggctttccccacactggcaaagatccttcctgtgttctcatccctgcagcacctg
gacctggactcactcagtgagaacaagattggggacgagggtgtgtcaaagctctcaacc
acctttcctcagctcaaggtcctggagacgctcaacctgtcccagaacagcatcacggac
gtgggtgcctgcaagcttgccgaagccttgcctgccctagccaagtccctcctaaggctg
agcttgtataataactgcatccgtgacgcaggagccaagagcctggcacaagtgcttcca
gacatggtgtccctgcgagtatgtccagttcaacaagttcacggctgccggtgcccagca
gctggcctccagccttcagaagtgccctcaagtggaaacactggcaatgtggacacctac
tatcccctttggggttcaggaacacttgcagcagctggattcccgaatcagcctgagatg
accctgctgtgctctggacaagcacggactcggggacattga
DBGET
integrated database retrieval system
