Arvicola amphibius (Eurasian water vole): 119811481
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Entry
119811481 CDS
T08327
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119811481
09122 Translation
03013 Nucleocytoplasmic transport
119811481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119811481
03041 Spliceosome [BR:
aamp03041
]
119811481
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119811481
Spliceosome [BR:
aamp03041
]
Complex C
Other components
EJC/TREX
119811481
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119811481
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
119811481
NCBI-ProteinID:
XP_038181342
LinkDB
All DBs
Position
1
Genome browser
AA seq
1588 aa
AA seq
DB search
MAMPAATVVVPTEWIKNWEKSGRSEFLRLCRILSESKSRDTLACRDFQQALYELSYHVIK
GTLKPEQASSVLSDISEFREDIPLILADIFCILDIETNCLEEKNKRDHFTQLVLACLYLV
SDTVLKERLDPETLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIVE
LGQDLSGNITSDLILEILKSLIGCFNLDPNRVLDIILEVFECRPEHHDFFISLLEAYMNM
CEPQTLCHILGFKFRFYQEPNGETPSSLYTVAAVLLQFNLIDLDDLYVHLLPADSCIVNE
YKREIVEAKHIVRKLTMVVLPSDKSDEREKEKKKDDKVEKAPDNQKLGLLEALLIIGDWQ
HAQSIMDRMPPYYAASHKVIALAICNLIHITIEPLYRRVGVPKGAKGSPVNALQNKKSPK
PAESFEDLRRDVFSMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGKQENKEKMEVIF
SCLLSITDQVLLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYHSHPLLVK
IKAHTVDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYVLSQIQKYDNLIAPVVDS
LKYLTALSYDVLAYCIVEALANPGKERMKHDDTTISSWLQSLASFCGAAFRKYPIDLAGL
LQYVANQLKAGKSFDLLILKEVVQKMAGIEVTEEMTMDQLEAMTGGEQLKAEGGYFGQIR
NTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQF
GGFLASNLSTDDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
KQQHKVHKYITSCEMVMAPVHEAVISLHISKVWEDISPQFYTTFWSLTMYDLAVPHTSYE
REVNKLKIQMKAIDDNQEMPLNKKKKEKERCTALQDKLLEEEKKQTEHVQRVLQRLKLEK
DNWLLAKSTKNETITKFLQLCIFPRCIFSAIDSVYCAHFVELVHQQKTPNFSTLLCYDRV
FSDIIYMVASFTENEASRYGRFLCCMLETVTRWHSDRSTYEKECGNYPGFLTILRATGFD
GGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNL
GQALERRVHKICQEEKEKKPDLYVLAMVYSGQLKNRKSYMIPENEFHHKDPPPRTAASSV
PNGPCSGLPSSIGNTSKSDESSTEETDKSRERSQCGLKAVTKASSALPKGSSNNGNSGSN
TKAVKENDKEKGKEKEKEKKEKTSAVTPEVRVLCKDSKEKPKEEQPNKDEKIRETKERMP
KSDKDKEKLKKEEKAKDEKFRITVPNIDSKSTQEREKEKEPSRERDLAKEMKSKENVKGG
EKTTVSGSLKSPVSRTDNAEPEREKRRKVDSHPSPSHSSTIKDSLNKLKESSAKLYINHA
PPPLCKSKEREMDKKDLDKSRERSREREKKEEKDRKERKRDYSNNDREVPLDLVKRRKDE
NGILGTSKHKSESPCECPYPNEKDKEKNKSKSSGKEKGDFFKPEKVDKVSSGKKESGHDK
EKVEKKEKWDSCGDKDEKKHHKSSDKHR
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgcccgcggcaacggtagtggttcccactgagtggatcaagaactgggagaaa
tctgggagaagcgagtttttgcgtttatgccggattctcagtgaaagtaaaagccgcgac
actttggcttgtagagattttcaacaagctctctatgagttgtcataccatgtcattaaa
ggaactttaaagccggaacaggcatccagtgttctcagtgacatcagtgaatttcgtgaa
gatattccacttattcttgctgacatattctgcatattagatattgagacgaattgttta
gaagaaaagaacaagagagatcattttacacagttggtattagcatgtttatatttagtt
tcagacacggttctaaaggaacgcttggatccagaaacattggagtcattaggccttatc
aaacaatcacagcagttcaatcagaagtcagttaaaatcaagacgaaactcttttacaaa
caacagaagttcaatttgttaagagaagaaaatgaaggttatgccaagcttattgttgaa
ttggggcaagatttatctggaaatattactagtgatttaatcttagaaattctcaaatct
ttaataggttgctttaatctagaccccaatcgagttttggatatcatattagaggtgttt
gagtgtcggccagaacaccatgatttctttatatctttattagaagcttacatgaatatg
tgtgaaccacagacattgtgtcatattcttgggttcaaattcaggttttaccaggaacca
aatggtgagactccatcatctttgtatacagtggcagcagtacttctgcagtttaacctt
atcgatttggatgatctttatgtacaccttcttccagctgacagttgcattgtgaatgaa
tacaaacgagaaattgtggaagctaagcacattgtcagaaaacttacaatggttgtattg
ccttctgacaaaagtgatgaacgagagaaagaaaagaaaaaagatgataaagtagaaaag
gcacctgacaatcaaaaacttggtttgttggaagccttgttaattattggtgattggcag
catgcacagagtattatggatcgaatgccgccgtactatgcagcgtcacataaagtaata
gcccttgctatttgcaatcttatacacataactattgagcctctttaccgaagagttggt
gttcctaaaggtgctaaaggctcacctgtcaatgctttacaaaacaagaagtcaccaaag
ccagcagagagctttgaagacttaaggagagatgtattcagtatgttctgttatcttggt
ccccacctttctcatgatcccatcttatttgcaaaggttgtgcgcataggcaagtcattt
atgaaggaatttcagtctgatgggaagcaagaaaataaagagaaaatggaagtcatcttt
agttgtttgcttagcatcactgaccaggtactacttccatctctttctttgatggattgc
aatgcgtgtatgtcagaggaactatggggaatgtttaaaacatttccttatcagcataga
taccgcttatatggccagtggaagaatgagacttaccatagtcacccacttttagtaaaa
attaaagctcacacagtagacagagccaagtacattatgaagcgtttaaccaaggaaaat
gtgaagccttcaggaagacagattgggaaactgagccacagcaatccaaccattttgttt
gattatgtcttgtcacaaatacagaaatatgataacttaatagcgcctgtggtggactca
ttgaaatacctcactgcgttgagttacgatgttctggcctactgtatcgttgaagcgctg
gctaacccaggaaaagaaaggatgaagcacgacgacaccaccatctcaagctggctgcag
agcctggctagcttctgcggtgcagcttttcgtaaatacccgattgaccttgctggtctt
cttcagtatgtagccaatcaattaaaggcaggcaaaagttttgacctgcttatattgaaa
gaagtggttcaaaaaatggcaggaatagaagttacagaggaaatgacaatggaccagcta
gaggctatgaccggtggggagcaactgaaagctgagggtggatattttggccagataaga
aacactaagaaatcctctcagagattgaaggatgcactgctggaccatgaccttgccctt
cctctctgcttgcttatggcccagcagaggaatggcgtgatctttcaggaaggcggagag
aaacatttgaagcttgtagggaagctgtatgaccagtgtcatgatactttggtacagttt
ggtggatttttagcttcaaatttaagcacagatgattacataaagagagtaccttcaatt
gatgtactgtgtaatgaatttcatacgccccatgatgcagcttttttcctgtctcggcca
atgtatgcgcaccatatttcatcaaagtatgatgaacttaagaaatcagaaaagggtagt
aaacagcaacataaagttcataaatacattacatcatgtgagatggtgatggctcctgtc
catgaagcagtgatctccttacacatttccaaagtctgggaagatatcagccctcagttt
tataccacgttctggtctctgacaatgtatgaccttgcagttccacacactagctatgaa
cgagaagtcaataaacttaagatccagatgaaagcaattgatgacaatcaagaaatgcct
ctaaataaaaagaaaaaagagaaagagcgctgtactgcccttcaggacaagcttcttgaa
gaagaaaagaaacagacggagcatgtgcagcgagttctacagagactgaaattggaaaag
gacaactggctcttagcaaaatctactaaaaatgagaccatcacaaagtttctccagctg
tgtatatttcctcgttgtattttttcagcaattgattctgtttactgtgcacattttgtt
gagttggtccaccaacagaagactccaaatttctccacacttctctgctatgatcgagtt
ttctctgatataatttacatggttgctagctttactgaaaatgaagctagtcgatatggt
agatttctttgctgcatgttagagacggtgactaggtggcatagcgacagatccacctat
gagaaggaatgtggaaactatccaggattccttactatattacgagcaactggatttgat
ggtggaaataaagcagatcagttagattatgagaattttcgacatgttgtacataaatgg
cattataaactaaccaaggcatcggtacattgccttgaaacaggtgaatatactcatatc
agaaatatcttgattgtgctcacaaaaatactgccatggtaccccaaagttttaaatctg
ggacaggctttggaaagaagggtacataaaatctgccaagaagagaaagaaaagaagcca
gatctgtatgtactagcgatggtctactctgggcagctgaaaaatagaaagtcatacatg
atacctgaaaatgaatttcatcacaaagatcctcctccaagaactgctgcttcaagtgta
ccaaatggaccttgtagcgggctgccatcttccataggaaacacgtctaagtcagatgag
agcagcactgaggagactgacaagtcaagggaaaggtctcagtgtggcctaaaagctgtc
actaaagcctctagtgccctaccaaaagggagttcaaacaatggaaacagcggctccaac
accaaggctgttaaggaaaatgacaaagaaaaggggaaagagaaggaaaaagagaaaaaa
gaaaagacctcagctgttactccagaagttagggtactttgtaaagacagtaaagagaaa
cccaaggaagagcagccaaataaagatgagaaaataagagagaccaaggaaagaatgcct
aaatctgacaaagataaggaaaaattaaagaaggaggaaaaagctaaagatgagaagttc
aggatcactgttcctaacatagattcaaaatccactcaagaaagagaaaaagagaaagag
ccatcaagagaaagagatttagcaaaggaaatgaaatcaaaagaaaacgttaaaggagga
gaaaaaacaacagtttctgggtccttgaaatcacctgtttcccgaacagataatgcagag
cccgaaagagaaaaacgtcgcaaggtagattcccatccttctccatcccattcttccaca
ataaaggacagtctcaacaaactcaaggagtcttcagcaaagctctacatcaaccatgct
ccaccaccgttgtgcaagagtaaggagagagaaatggacaagaaagatttggacaagtcg
agggaaagatccagagagagagaaaaaaaagaagaaaaggaccggaaagagcggaaaagg
gattattcaaacaatgaccgggaagtgcctctagacttagtcaaaaggcggaaagatgaa
aatggaatattggggacatcaaagcacaaaagtgaaagcccctgtgagtgtccttatcca
aatgagaaagacaaggaaaaaaataagtcaaaatcctcaggcaaagaaaaaggtgatttc
ttcaaacctgaaaaggtggataaagtatccagtgggaaaaaggagtctggacatgataaa
gaaaaggtagaaaagaaagagaaatgggacagttgtggagataaggacgagaagaagcat
cataagtcctcagacaaacacagataa
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integrated database retrieval system
