Arvicola amphibius (Eurasian water vole): 119811648
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Entry
119811648 CDS
T08327
Symbol
Upf3a
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03013
Nucleocytoplasmic transport
aamp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119811648 (Upf3a)
03015 mRNA surveillance pathway
119811648 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119811648 (Upf3a)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119811648 (Upf3a)
mRNA cycle factors
P-body specific factors
119811648 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
119811648
NCBI-ProteinID:
XP_041910864
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All DBs
Position
4:complement(153550649..153567473)
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AA seq
461 aa
AA seq
DB search
MTTSGHCSRSAGPNPPQERAPPLTTGKGGPFRYIPEWARNCSGLLGASSRRLSGTPSTIA
AQQPTGCPERASVFSVHSDSIDLLSSLLLYDEGCFGKGWIQHTRELGAPPAAVRAVRDAP
DRRWAALAAAAGGRWGCGSEEGAGGPGAALSARGPSWREKLTAPEAQFRRESPRRESALA
PAPSFNESGAGKPREEKRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSL
YPHLYSRAYINFRNPDDILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDT
KTGSIEETPEYKQFLETYSLEEEKAGASPETLLGEIEVKTRELLARRTTPLLEYIKTRKL
EKQRIREEKREERRRRELEKKRFREEEKRKRREEERWRRKEADKQKRTEKEVKIKLLKKL
ETGEEAATEKHKERSDSVGPGDEKQEARPVESLPEMPGERF
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatctggacactgcagcaggagcgctggccccaaccctcctcaggagagagct
ccacccctcaccacaggcaagggtgggccatttcggtacatccctgagtgggccagaaac
tgctctgggctcctgggggcctccagtcgcagactatcagggacgccatccaccatcgca
gctcagcagcccacaggatgtccggagcgtgcatctgttttttccgtgcacagtgacagt
attgatctcctgtcgtcgctgctgttgtatgatgagggttgttttggaaaaggctggatt
cagcacacgcgtgaacttggggcccctccagcagcagtcagagctgtccgggatgcccct
gaccggcgctgggcagcactggcggcggcggcgggcggccggtggggatgcggctcggaa
gagggggctggaggcccgggcgccgccctgtctgcgcggggccccagctggagggagaaa
ctgacggccccggaggcccaattccgccgcgagtcgcctcggagggagtccgcgctagca
ccggccccgtccttcaatgagagcggggcaggcaagcctcgcgaggagaagaggacggcg
ctgagcaaggtggttctccggcgtctgccccccggcctcaccaaagagcagctggaggag
caactgcgccccctgcctgcgcacgactacttcgaggtggtagctgcagacctcagtctc
tatcctcatctctactcacgagcatacattaacttccggaaccctgatgacatccttctg
ttcagagatcgctttgatggatatatcttcattggcaataaaggcctggagtaccctgcg
gtggtggagtttgctccgttccagaagattgccaagaagaagctgaagaaaaaggacacc
aagactggaagcattgaagagaccccagaatataaacagtttctggaaacatacagcttg
gaggaagaaaaagccggtgccagtcctgagacgcttctgggagagatagaagtgaagacg
agagagctcctggccagaagaaccacacctcttttagaatatattaaaactagaaaacta
gaaaagcagagaattcgagaagaaaaacgcgaagagcgaaggaggagggagctggaaaag
aagcgtttccgggaagaagagaaaaggaaaaggagggaagaagagaggtggagaaggaag
gaggcggataagcagaagagaactgagaaggaggtgaagattaagcttctcaaaaaactg
gaaacaggggaagaagcagccacagagaagcacaaagaaagaagtgactcagttggtcct
ggagacgaaaagcaggaagcccggccagtggaaagcctgccagagatgcctggggagagg
ttttga
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