Arvicola amphibius (Eurasian water vole): 119811742
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Entry
119811742 CDS
T08327
Symbol
Lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1 isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119811742 (Lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119811742 (Lsm1)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119811742 (Lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
119811742 (Lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
119811742
NCBI-ProteinID:
XP_038181653
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All DBs
Position
4:complement(145367624..145380063)
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQSRLEAEKLKVQALKDR
GLSIPRADTLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaactatatgcccgggaccgccagcctcatcgaggacatcgacaaaaaacacttggtc
ctacttcgtgatggaaggacactgatagggtttttaagaagcattgatcagtttgccaac
ttagtgctgcatcagactgtagagcgcattcatgtgggcaaaaagtacggtgatattcct
cgagggatttttgtggtcagaggagaaaatgtggtcctacttggagaaatagacttggaa
aaggagagtgacacacccctccagcaagtgtctattgaagagatcctagaagaacagagg
gtagaacagcagagcagactggaggcagagaagctgaaggttcaggcccttaaagatcgg
ggcctctccatccctcgagcagatactctggacgagtactga
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