Arvicola amphibius (Eurasian water vole): 119812174
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Entry
119812174 CDS
T08327
Symbol
Prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119812174 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119812174 (Prpf8)
Spliceosome [BR:
aamp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119812174 (Prpf8)
Complex C
U5 SnRNP specific factors
119812174 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119812174
NCBI-ProteinID:
XP_038182545
LinkDB
All DBs
Position
4:complement(45849892..45875461)
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtgtttccttaccgagggccgggtaacccggttcccggccctctagccccg
ctgccggactacatgtcagaggagaagctgcaggagaaagctcgaaaatggcagcagttg
caggccaagcgttatgcagagaagcggaaatttgggtttgtggatgctcagaaggaagac
atgcccccagaacatgtcaggaagatcattagagaccatggagacatgaccaacaggaag
ttccgccatgacaaaagggtctatttgggagccctcaagtacatgcctcatgctgttctc
aagctcctggagaacatgcccatgccttgggaacagattcgggacgtgcctgttctctac
cacatcactggcgccatttcctttgtcaacgagattccctgggttattgagcctgtttac
atctcccagtggggatcgatgtggatcatgatgcgtcgagagaaaagagacaggaggcat
ttcaagaggatgcggttccccccatttgatgacgaggaaccgcccctggattatgctgac
aacatcttagatgttgagccactggaagctattcagctagagttggaccctgaggaggat
gcccctgtgttggactggttctatgaccaccagcctttgagagacagtaggaagtatgtt
aatggttccacttaccaacgctggcagtttacactgccaatgatgtccactctctaccga
ttggccaatcagcttctgactgacttggtggatgacaactacttctatctgtttgatctg
aaggccttctttacctctaaggcactcaatatggccattcctggaggacccaaatttgaa
cctcttgttcgagacatcaacctacaggatgaagactggaatgagttcaatgatattaat
aagatcatcatccgtcagcctattcgtactgagtacaagattgcttttccttacctgtat
aacaaccttccacaccacgttcacctgacctggtaccacactcctaacgttgtgttcatc
aagactgaggaccctgatttgcccgctttctactttgatcctctcatcaaccccatctct
cacagacactcagtcaagagccaggaaccactgcccgatgatgatgaggaatttgaactt
ccagagtttgtagagcccttcctgaaggacacacccctctatacagacaacacagccaat
ggcattgctctactctgggcaccgaggccctttaacttacgctctggtcgtacccgccgg
gctctggacataccccttgtcaagaactggtatcgggaacactgtcctgccgggcagcct
gtgaaggtgcgagtctcctatcagaagctgcttaagtactatgtgctgaatgccctcaag
catcggcctcccaaagcccaaaaaaagaggtatctcttccgctcattcaaagccaccaaa
ttctttcaatccacaaaactagactgggtggaggtagggctgcaggtttgccgccagggc
tacaacatgctcaaccttctcattcaccggaagaacctcaactacctgcacttggactat
aacttcaacctgaagcctgtcaagacactcaccacaaaggaaagaaagaagtctcgtttt
gggaatgccttccatctatgtcgggaagtgctgcgtctaaccaagctggtcgtggatagt
catgtgcagtatcgcttgggcaatgtagatgccttccagctggcagatggattgcagtat
atatttgcccacgtggggcagttgaccggcatgtatcggtacaagtacaaactgatgcgg
cagatccgcatgtgcaaggacttgaagcatctcatctattaccgcttcaacacgggtcct
gtagggaaaggccctggctgtggtttctgggctgctggctggcgagtctggctgtttttt
atgcgtggaattacccctttgctagagcgctggctgggcaacctcctggcccggcagttt
gaaggtcgtcactcaaagggggtggcaaagacagtaacaaagcagcgagtggagtcccat
tttgacctggagctcagggcagctgtgatgcatgacatcctggacatgatgcctgagggg
atcaagcagaacaaggcccggacaattctgcagcacctcagtgaggcctggcgctgctgg
aaggccaacattccctggaaggtcccagggttgccaacacctatagagaatatgattctt
cggtacgttaaggccaaggctgattggtggaccaatactgcccactacaaccgtgaacga
atccgccgtggggccactgtagataagactgtttgcaaaaagaacctgggccgcctcacc
cgcctgtacttgaaggcagaacaggagcggcagcacaattacctgaaggatgggccgtac
attacagcagaagaagcggtagcagtgtatactaccactgtgcattggttggaaagccgc
agattctctcccatcccattccctccgctctcctacaagcacgatactaagttgctcatc
ttggctctggagcgcctcaaggaagcttatagtgtgaagtctaggttaaaccagtctcag
agggaggagctgggtctgatcgagcaagcctacgacaacccccatgaggctttgtcccgc
atcaagcgtcaccttctcacacagagagcctttaaagaagtgggcattgagtttatggat
ctctatagccacctggtgccagtgtatgatgtggaacccctggagaaaataactgatgcc
tacctggaccagtatctgtggtatgaagcagataaacgccgtcttttcccgccctggatc
aagcctgccgatacagaaccacctccactgcttgtttacaagtggtgccaaggcatcaat
aacctgcaggatgtgtgggagaccagtgagggcgagtgcaatgtcatgttggagtcccgc
tttgagaagatgtatgaaaagattgacttgaccctgcttaacaggctgctacggctcatt
gtggaccacaacatagctgactacatgacagccaagaacaacgtcgtcattaactataag
gacatgaaccatacaaattcatacgggatcatcagaggcctgcagtttgcctcgttcatt
gtgcagtactatggcttggtgatggatttgcttgtattgggattgcaccgggccagtgag
atggctgggcctcctcagatgccaaatgactttctcagtttccaggacatagccactgag
gctgcgcacccaatccgactcttctgtagatacattgatcgcattcatattttcttcagg
ttcacagcagatgaggctcgggatctgatccagcgttacctgacagagcatccagatccc
aacaatgaaaacattgttggctacaataacaagaaatgctggccccgggatgcccgcatg
cgcctcatgaaacatgatgtcaacttgggtcgggcagtgttctgggacattaaaaaccgg
ctgccacgatcagtgactacggtacagtgggagaacagctttgtgtccgtgtacagtaaa
gacaaccccaacctgctgttcaacatgtgtggcttcgagtgccgcatcctgcctaagtgt
cgcaccagctatgaagagttcacccacaaggacggggtgtggaaccttcagaatgaggtt
accaaggagaggacagcgcagtgtttcctgcgtgtggatgatgagtcgatgcaacgcttc
cataaccgagtgcgtcagattctaatggcctctggctccaccacctttaccaagattgtg
aataagtggaatacagctctcatcggccttatgacatattttcgagaggctgtggtgaac
acgcaggaactcctagacttattggtaaagtgtgaaaacaagatccagacacgtatcaag
attggattgaactccaagatgccaagtcggttcccccctgttgtgttctacacccctaag
gagctgggtgggcttggcatgctctcaatgggccacgtgctcatcccccagtctgatctc
aggtggtctaagcaaacagatgtgggtatcacacacttccgttcaggaatgagtcatgaa
gaagaccaactgattcccaacttgtaccgctacatacagccatgggagagcgagttcatt
gactctcagcgcgtctgggctgagtatgcactcaagagacaggaggctattgctcagaac
agacggttgactttagaagatttagaagattcatgggatcgaggcattccacggatcaat
actctcttccagaaggaccggcacacattggcttatgataagggctggcgtgtccgaact
gacttcaagcagtaccaggttctgaagcagaaccccttctggtggacacatcagcggcat
gacggcaagctctggaacctcaacaactaccgcacagacatgattcaggccctgggtggt
gtggagggcattctggagcacactctcttcaagggcacatactttcctacctgggaaggt
ttgttctgggagaaagccagtggctttgaggagtccatgaagtggaagaagctaaccaat
gctcagcgatctggattaaaccagattcctaatcgtagattcaccctctggtggtcccca
acaatcaatcgagccaatgtatatgtaggctttcaggtgcagctggacttgacaggaatc
ttcatgcatggcaagatccccacactgaagatctctctcatccagatattccgagctcac
ctgtggcagaagatccatgaaagcatcgtgatggacttatgtcaggtctttgaccaggaa
ctggatgccctggaaattgagacagtacagaaggagacaatccacccccggaagtcctac
aagatgaactcctcctgtgccgacattctactcttcgcttcctacaagtggaatgtctcc
cggccctcgctgctggcagactccaaggacgtgatggacagtacaaccacacagaagtac
tggatcgacatccagttacgttggggcgactatgattcccacgatattgagcgctatgcc
cgggccaaattcctggattataccacagacaacatgagtatctacccttcacccacaggt
gtgctcattgccattgacctggcctacaatctacacagtgcctatggaaactggtttcca
ggcagcaagcctctgatacagcaggccatggccaagatcatgaaggcaaaccctgccttg
tatgtgttacgtgagcggatacgcaaaggactgcagctgtattcatcggagcccactgag
ccatatctgtcctcccagaactatggtgaactcttctctaaccagattatctggtttgtg
gatgacaccaatgtctatagagtgactatccacaagacctttgaggggaacttgacaacc
aaacccatcaatggggccatcttcatctttaacccacgcacggggcagcttttcctcaag
ataatccacacatctgtgtgggctggacagaagcgtttgggtcagttggccaagtggaag
acagctgaggaagtggcggccctgatccgatctctgcctgtggaggaacagcctaaacag
atcattgtcaccaggaagggcatgctggatcctttggaggtacacttgctggacttcccc
aacattgtgatcaaaggatcggagctccagctccccttccaggcttgtctcaaggtggag
aagtttggggatctcatccttaaagccacagaaccccagatggttctcttcaacctctac
gatgactggctcaaaactatctcatcttacacggctttctctcgtctcatcctgattctg
cgtgctttgcacgtgaacaacgatcgggcaaaggtgatcctgaagccagacaaaaccact
atcacagaaccacaccacatctggcccacgctgactgacgaggagtggatcaaggtggag
gtgcagctcaaggacctgatcttggccgactacggcaagaagaacaacgtgaacgtggca
tccctgacgcaatcagaaatccgagacatcatcctgggaatggagatctcagcgccgtcc
cagcagcgccagcagatagctgagatcgagaagcagaccaaggagcagtcgcagctcacc
gccacgcagacacggactgtcaacaagcatggtgacgagatcatcacctccaccactagc
aactatgaaacccagaccttctcgtcaaagactgaatggagggtcagggccatctccgct
gccaacctgcatctgcggaccaatcacatttatgtttcatctgatgacatcaaggagact
ggatatacttacattcttcccaagaatgtgcttaagaagttcatctgcatatctgatctc
cgtgcccaaattgcaggatacctatatggggtgagtcctccagataaccctcaggtgaag
gagatccgctgtattgtgatggtgccacagtggggcactcaccagactgtccacctgccc
agccagctgccccagcatgagtacctcaaggagatggaacccttaggttggatccatact
cagcccaatgagtctccccaattatcaccccaagatgtcaccactcatgccaagatcatg
gctgacaacccgtcctgggatggcgagaagacaattatcatcacctgcagcttcacccca
ggctcctgcacactgacagcctacaagctgacccccagtggctatgagtggggccgacag
aacactgacaaaggcaacaatcccaaaggctacctgccctcgcactacgagagggtccag
atgctcctgtcagaccgattcctcggcttctttatggttcctgcccagtcctcctggaac
tacaactttatgggtgttcggcatgatcccaacatgaaatatgagctgcagctggcaaac
cccaaggaattctaccatgaggtccataggccctcccacttcctcaacttcgccctcctg
caggaaggcgaggtctattctgcagacagagaagatctctacgcctag
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integrated database retrieval system
