Arvicola amphibius (Eurasian water vole): 119812363
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Entry
119812363 CDS
T08327
Symbol
Rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03440
Homologous recombination
aamp03450
Non-homologous end-joining
aamp04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119812363 (Rad50)
03450 Non-homologous end-joining
119812363 (Rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
119812363 (Rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamp03032
]
119812363 (Rad50)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119812363 (Rad50)
DNA replication proteins [BR:
aamp03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
119812363 (Rad50)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
119812363 (Rad50)
BRCA1-C complex
119812363 (Rad50)
NHEJ (non-homologous end-joining)
MRX complex
119812363 (Rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_29
SBP_bac_3
DUF2703
Motif
Other DBs
NCBI-GeneID:
119812363
NCBI-ProteinID:
XP_038182906
LinkDB
All DBs
Position
4:67264964..67325205
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEVVAVQRSMLCSQKSKKTEFKTLEGIITR
RKHGENVSLSSKCAEIDREMISCLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQAELKYLKQNKEKACEIRDQITSKEAQLKSSQEI
VKSYENELEPLKNRLKEIEHNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLNKEARLLSQEREELLVEQGRLQQQADRH
QEHIRARDSLIQSLATHLELDGFEHGPFSERQIINFHELVREKQEREAKTASQLLNDLTE
KETLKQKQIDEIRDKKSGLGRVIELKTELLTKKQSELRNVKNELQRLEGSSDRILELDQE
LTKAERELSKAEKNSNVEALKAEVISLQNEKADLDRSLRKLDQEMEQLNHHTTTLTQMEM
LSKNKTDKDEQIRKIKSRHSSELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLASLNKE
LASAEQNKNHTTNELKKKEEQLSSYEYKLFDVCGSQDFESDLDRLKEDIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLRLVPMRESIIDLKEKEIPGLRNKLQSVSGDIQNLKTGIEEQETLLGTIMP
EEESAKVCLTDVTIMERLQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHKVD
TVSSKIELNRKLIQDQQEQIQCLKSKTNELKSEKLQISTNLQRRQQMEEQTVELSTEVQS
LYREIKDAKEQINPLETALEKFQQEKEELIHRKHTSNKMAQDKINDIKEKVKNINGYMKD
IENYIQDGKDDYKKQKETELNEVVVQLNDCDRHKEKINKEMGTMRQDIDTQKIQERWLQD
NLTLRKRKEELKEVEEERKQHLKEMGQMQVLQMKNEHQKLEENIDTIKRNHSVALGRQKG
YEEEILHFKKELREPQFRDAEEKYREMMIVMRTTELANKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRVRKNMDQCSEIVTCNINSLVSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttgggatagaggataaa
gataagcaaattatcactttcttcagccccctcacaattttggttggacccaatggggcg
gggaagacgaccatcattgaatgtctaaagtatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcccaaggttgctcaagaaacagatgtgcgagcc
cagattcgcctgcagtttcgagatgtcaatggagaggtggtggctgtgcagaggtctatg
ctttgtagtcagaaaagcaaaaaaaccgaatttaaaaccctggaaggaatcattactaga
aggaagcatggtgaaaatgtcagtctgagctccaaatgtgcagaaatcgaccgagaaatg
ataagctgtcttggggtttccaaggctgtgctaaataatgtcattttctgtcaccaagaa
gactccaactggcctttaagtgaaggaaaggccctgaagcaaaagtttgatgagattttt
tctgcaacaaggtacattaaagccttagatacacttcgacaggtacgtcagactcaaggt
cagaaggtaaaagagtgtcaagcagaattgaaatatctgaaacaaaataaggaaaaagct
tgtgagattcgcgatcagatcactagtaaggaagcccagttaaagtcttcacaggaaatt
gtcaagtcctatgagaatgaacttgagccgctgaagaatcgtttgaaagaaattgaacac
aacctttctaaaatcatgagacttgacaatgaaattaaagccttggatagccgaaagaaa
caaatggagaaagataatagtgaattagaacagaaaatggaaaaggttttccaagggaca
gatgagcaactgaatgatttgtatcacaaccaccagagaacagtgagggagaaagaaagg
cgcttggtagactgtcagcgcgaattggagaagctgaataaagaagcccggctcctcagc
caggagagagaggagctgctggtggagcagggtcgtctacaacaacaggcagatcgccat
caagagcatatccgagccagagattcattaatccagtctttggcaacacatcttgaattg
gatggttttgagcatggaccctttagtgaaagacagattataaattttcatgaacttgtg
agagagaaacaggaaagagaagctaaaactgccagccagctcttgaatgaccttacagag
aaagaaactttgaagcagaagcagattgatgagataagggacaagaagagtggactggga
agagtgatcgagctgaaaacagagctcctcaccaagaaacagagcgagctgaggaatgtg
aagaatgagctgcagcggctggagggctcatcggacaggattctggagctggaccaggag
ctcacaaaagcggaacgtgaactaagcaaggctgagaaaaatagcaatgtagaagcccta
aaagcagaggtaataagcctccaaaatgagaaagctgacctggacagaagcttgcggaag
ctggaccaggagatggagcagttaaatcaccatacaacaacactcacgcagatggagatg
ctgtccaaaaacaaaactgacaaagatgaacagatcagaaaaataaagtctaggcacagc
agtgaactgacttccctgttggggtattttcctaacaagaaacagcttgaagactggctt
cattctaaatccaaagaaatcaatcagaccagggacagacttgccagcctgaacaaagaa
ctagcttcagctgaacagaataaaaaccatacaactaatgagctgaagaaaaaggaagaa
cagttgtccagttatgaatataagttgtttgatgtttgtggtagccaggattttgaaagt
gatttagaccggcttaaagaagacattgaaaagtcctcaaaacagcgagccatgctggct
ggagccacagccgtttactcccagttcattactcagctgacagatgaaaaccagtcctgt
tgcccagtctgtcagagagtatttcagacagaggctgagttacaagaagtcatcagtgac
ttgcagtccaagctgaggcttgctcccgataagctcaagtcaacggaatcagaactaaag
aaaaaagagcggcgccgtgatgaaatgcttaggcttgtgcccatgagggaaagcataatt
gatttgaaggagaaggaaataccaggattaagaaacaaactgcagagtgtcagcggagac
atacagaacctgaagactggcatagaagaacaggaaacactcttgggaacaataatgcct
gaagaagaaagtgctaaagtatgcctcacagatgttacaattatggagaggctccagatg
gagctgaaagatgttgaaaggaaaattgcacagcaggcagctaagctgcaaggggtagac
ttggatcgaactgtccagcaggttaaccaggaaaaacaagaaaaacaacacaaagtggat
acagtttccagtaagattgaattgaaccgtaagcttatacaggaccaacaggagcaaatt
cagtgcctgaaaagtaaaacaaatgagctgaaatcagagaaactgcagatatccacaaat
ttgcaacgtcgtcagcaaatggaggagcaaactgtggaattgtccactgaagttcagtct
ttatacagagagataaaggatgctaaagagcaaataaaccctttggagacagcactggaa
aagttccagcaggaaaaagaagaattaatccacagaaaacatacaagcaacaaaatggct
caggataaaatcaatgatatcaaagagaaggttaaaaatattaatggttacatgaaagac
atagagaattatattcaagatggaaaagatgactataaaaagcaaaaggaaaccgaactt
aatgaagttgtagttcaactaaatgactgtgacagacacaaagaaaagataaataaagaa
atgggaaccatgaggcaagatattgacacacagaagatacaagaaaggtggctacaggat
aaccttacactaaggaaaagaaaagaggaactaaaagaagttgaagaagaaagaaaacaa
catttgaaggagatgggacaaatgcaagttttacaaatgaaaaatgagcatcagaagttg
gaagagaacatagacactataaaacgaaaccacagtgtggcattggggcgacagaagggc
tatgaagaagaaattcttcactttaagaaggagctccgagaacctcagtttcgggatgcc
gaggagaagtatagagaaatgatgattgtcatgagaaccacagagctggcgaacaaggac
ctggacatctactacaagactctggaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgatctttggcggagtacttatcgtggacaagatatt
gaatacatagaaattcgatcagatgctgatgaaaacgtatctgcttctgacaaaaggcgg
aattacaactaccgagtggtgatgctgaagggcgatacagccttggacatgcggggacga
tgtagtgctggacagaaggtgctagcctctctcattatccgcttggcgctggctgaaacc
ttctgtctgaactgtggcatccttgccttggatgagccgacgacaaatcttgaccgagag
aacattgaatctcttgcacatgctttggttgagatcataaaaagtcgctcgcagcagcgt
aacttccagcttctggtaatcactcatgatgaagattttgtggagctcttagggcgatct
gagtacgtggagaaattctacagggtgaggaagaacatggaccagtgctcggagattgtg
acatgcaacattaactccctggtctcttacgttcactaa
DBGET
integrated database retrieval system
