Arvicola amphibius (Eurasian water vole): 119812625
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Entry
119812625 CDS
T08327
Symbol
Vldlr
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp05017
Spinocerebellar ataxia
aamp05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
119812625 (Vldlr)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
119812625 (Vldlr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119812625 (Vldlr)
Membrane trafficking [BR:
aamp04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119812625 (Vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
119812625
NCBI-ProteinID:
XP_038183337
LinkDB
All DBs
Position
1:168310548..168343958
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AA seq
873 aa
AA seq
DB search
MGTSARWALWLLLALCWAPRDSGASASGKKAKCDNSQFQCTNGRCITLLWKCDGDEDCVD
GSDEKNCVKKTCAESDFVCKNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISC
GARSTQCIPVSWRCDGENDCDNGEDEENCGNITCSADEFTCSSGRCVSRNFVCNGQDDCD
DGSDELDCAPPTCGAHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPAMHTKCP
ASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGI
RDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCDQEQDCRDWSDEPLKECNVNEC
LVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVCKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVA
TLDGAKRKFLFNTDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQ
WPNGITLDLVKSRLYWLDSKLHMLSSVDLDGQDRRIVLKSLEFLAHPLALTIFEDRVYWI
DGENEAVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPAGKNWCEEDAENGGCEYLCL
PAPQISDHSPKYTCSCPNGYSLGENGRECQSPSTPVTYSETKDINTTDILRTSGLVPGEI
NVTTAVSEVSVPPKGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKT
TEEDLSIDIGRHSASVGHTYPAISVVSTDDDLA
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtccgcgcgctgggcgctgtggctgctgctcgcgctgtgctgggcgccccgg
gacagcggcgcctctgcaagcgggaaaaaagccaaatgtgataattcccaattccagtgc
acaaatggccgctgcatcactctactgtggaaatgcgacggcgatgaagactgtgttgac
ggcagcgacgagaaaaactgcgtaaagaagacgtgtgccgagtctgacttcgtgtgcaaa
aacggccagtgtgttcctaacagatggcagtgcgatggggaccctgattgtgaagacggt
tctgatgagagcccggaacagtgccatatgagaacatgccgcataaatgaaatcagctgt
ggcgcccggtccactcagtgtatcccagtgtcctggcgatgtgatggtgaaaatgattgt
gacaatggcgaagatgaagaaaactgtggcaacataacctgtagcgctgatgagttcact
tgctccagcggccgctgcgtctccaggaactttgtgtgcaacggccaggatgactgtgac
gacggcagcgatgaactggactgcgcaccgccgacctgcggggcccatgagttccagtgc
agcacctcttcctgcatccccctcagctgggtgtgcgatgatgacgcagattgttcggac
cagtcagacgagtctctcgaacagtgcggccgtcagcccgcgatgcatacgaaatgtcct
gccagtgagatccagtgcggctctggcgaatgcattcacaaaaaatggcggtgtgacgga
gatcccgactgcaaggacggcagcgacgaggttaactgcccttctcgaacctgcagacct
gaccaatttgaatgtgaagatggtagctgcatccatggcagcaggcagtgcaatggcatc
cgggactgtgtggatggctctgatgaagtcaattgcaaaaacgtcaatcagtgcttgggc
cctggaaagttcaagtgcagaagtggcgaatgcatagacatcagcaaagtgtgtgaccag
gagcaggactgcagggactggagcgatgaacccctgaaggagtgcaatgtcaatgaatgc
ttggtcaataacggtggctgctctcatatctgcaaagacctagtcataggctatgaatgt
gactgtgccgctgggtttgagctgatagataggaagacctgtggagatatcgacgaatgc
caaaatccagggatctgcagccagatttgtatcaacttaaaaggcggctacaagtgtgaa
tgtagtcgtggctatcaaatggatcttgccactggcgtgtgcaaggcagtaggcaaagag
ccaagtctgatcttcactaatcgaagagacatcaggaagattggcctagagaggaaggaa
tacatccaacttgtagaacaactaagaaacacggtagctctcgatgctgacattgcagct
cagaagctattttgggctgatctaagccaaaaggccattttcagtgcctcaattgatgac
aaggttggtagacattttaaaatgatcgacaatgtctataatcctgcagccattgctgtt
gattgggtgtacaagaccatctactggactgatgcggcttctaagactatttccgtagct
accctagacggagccaagaggaagttcctgtttaacactgacttgcgagagcctgcttcc
atagctgtggacccattgtctggctttgtctactggtctgactggggcgaaccagctaaa
atagagaaagcggggatgaatggctttgataggcgtccacttgtgacggaggacatccaa
tggcctaatggaattacactcgaccttgtcaaaagccgcctctactggcttgattccaag
ttgcacatgctgtctagtgtggacttggatggccaagatcgtaggatagtgctcaagtct
ctggagttcctagctcatcctcttgcgctcaccatatttgaggatcgtgtctactggata
gatggagaaaatgaagcagtgtacggtgccaataaattcactgggtcagagctggctacc
ctagtcaacaaccttaatgatgcccaagacatcattgtctaccatgaactcgttcagcca
gcaggtaaaaactggtgtgaagaagatgcggagaatggaggatgcgaatacctctgcctg
ccagcaccacagatcagtgaccactctccgaaatatacctgttcctgtcccaatgggtac
agtctcggggaaaacggacgagagtgccaaagtccttcaactcctgtgacttacagtgag
acaaaagatatcaacacaacagacattctgcgtactagtggactggttcctggagagatc
aatgtgactacagcagtatcggaggtcagtgttcctccaaaaggaacttcagctgcctgg
gccatcctccctctcttgctcttggtgatggcagcagtcgggggctacttgatgtggcgg
aattggcaacataaaaacatgaaaagcatgaactttgacaatcctgtgtacttaaagacc
actgaagaggacctctcaatagacattggtagacacagtgcttctgtcggacacacgtac
ccagcaatatcagtcgtaagcacagatgatgatctagcttga
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