Arvicola amphibius (Eurasian water vole): 119812664
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Entry
119812664 CDS
T08327
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03030
DNA replication
aamp03420
Nucleotide excision repair
aamp03430
Mismatch repair
aamp03440
Homologous recombination
aamp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119812664 (Rpa1)
03420 Nucleotide excision repair
119812664 (Rpa1)
03430 Mismatch repair
119812664 (Rpa1)
03440 Homologous recombination
119812664 (Rpa1)
03460 Fanconi anemia pathway
119812664 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119812664 (Rpa1)
03032 DNA replication proteins [BR:
aamp03032
]
119812664 (Rpa1)
03400 DNA repair and recombination proteins [BR:
aamp03400
]
119812664 (Rpa1)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119812664 (Rpa1)
DNA replication proteins [BR:
aamp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119812664 (Rpa1)
DNA repair and recombination proteins [BR:
aamp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119812664 (Rpa1)
MMR (mismatch excision repair)
119812664 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
119812664 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Ssb-like_OB
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
119812664
NCBI-ProteinID:
XP_038183427
LinkDB
All DBs
Position
4:46008239..46062924
Genome browser
AA seq
614 aa
AA seq
DB search
MVGHLSEGAIATIMQQGDTSIKPVLQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEGEKLASNCICQVNRFIVNTLKDGRRVVILMDVEVVKSAEAVGVKIGNPVPYNE
GHGQQQVVPSPASATTPPASKPQPQNGSLGMGSTVAKAYGASKPFGKPAGTGLLQPSGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSMELVDETGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLLCEDDRNLPTVQF
DFTGIGDLESKSKDSLVDIIGICKSYEDSTKITVKSNNREVAKRNIYLMDMSGKVVTTTL
WGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVMFLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANVADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
DYAKRLIMNIKRNI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccattgcgaccataatgcaacagggagatacatcc
ataaagcctgtccttcaagtcattaacatccgtcccattactacagggaatagtccaccc
cggtatcgactgcttatgagtgatggattgaacacgctctcctcattcatgttggccaca
cagctgaaccctcttgtcgagggggagaagctggccagcaactgtatctgccaggtcaac
cgattcatcgttaacaccctgaaagatggaaggagagtagttattttgatggatgtggaa
gttgtgaaatcagctgaagcagttggagtaaaaattgggaacccagtgccctataatgaa
ggccatgggcagcagcaagttgttccttccccagcctcagcaaccacaccaccagccagc
aagccccagccacagaatggaagcttgggaatgggttccactgtggctaaggcttatggt
gcctcaaagccatttggaaaacctgctggaactggcctgctgcagccttcaggagggaca
cagtccaaagtggtacccatcgccagcctcaccccttaccaatccaagtggactatctgt
gcccgtgtcaccaacaaaagtcagatccgtacctggagcaattcccgaggggaagggaag
ctcttctctatggaacttgtggatgaaactggtgaaatcagagcgactgctttcaatgaa
caggtggacaagttctttccccttattgaagtgaacaaggtgtattatttctcaaaaggc
actctgaagatcgctaacaagcagttctcagctgttaaaaatgactatgagatgaccttc
aataatgagacttctgtccttctctgtgaagatgaccgtaacttacccacagttcagttt
gatttcacagggattggtgacctagagagcaagtctaaagactcacttgtagacataatt
gggatctgcaagagctacgaagattcaactaaaatcacagtgaagtctaacaacagagaa
gtggctaagagaaatatctatttgatggacatgtcagggaaagtggtgactacaactctg
tggggagaagacgctgacaagtttgatggctctagacagcctgtgatggctatcaaagga
gcccgggtttctgactttggcggacgaagcctctctgtcctgtcatctagcactgtcatt
atgaatcctgacatcccagaggcctataagcttcgtggatggttcgactcagaaggacaa
gccttagatggtgtttccatctctgacctcaggagcggaggcactggagggagcaacaca
aactggaaaactttgtatgaggctaaatctgagaacctgggccagggtgacaaggctgac
tatttcagcaccgtggcgacagtgatgtttcttcgcaaagagaattgtatgtaccaggcc
tgcccaacccaggactgcaataagaaagtgattgaccagcagaatgggttgtaccgctgt
gagaagtgtgaccgggaatttcccaacttcaaataccgcatgatcttatcggcaaatgtt
gcggattttcaagagaatcagtgggtgacgtgtttccaggagtctgcggaggctatcctt
ggacagaatactgcgtaccttggggagctgaaagaaaagaacgagcaggcgtttgaagag
gtttttcagaatgccaacttccgatcatttacattcagaatccgggtcaagctggagacc
tacaatgatgaatctcgaattaaggccactgtgatggacgtgaagcccgtggactacaga
gactatgccaagaggctgatcatgaacatcaagaggaacatatga
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