Arvicola amphibius (Eurasian water vole): 119812895
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Entry
119812895 CDS
T08327
Symbol
Parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119812895 (Parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamp03019
]
119812895 (Parn)
Enzymes [BR:
aamp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119812895 (Parn)
Messenger RNA biogenesis [BR:
aamp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119812895 (Parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
119812895
NCBI-ProteinID:
XP_038183840
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All DBs
Position
4:complement(102210292..102312346)
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AA seq
624 aa
AA seq
DB search
MEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTPEERYQKLKKH
SMDFLLFQFGLCAFKYDHTDSKHITKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQG
FDFNKVFCSGIPYLNQEEERQLREQFDERRSQASGAGTVAKCPVTVPEDQKKFIDHVVKK
IEDFLQNEEKKILDLEPCTGFQRKLIYQTLSWKFPKGIHVETLETEKKERHILISKVDEE
ERKRREQEKYAKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFYCPLPAD
LNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFP
SYNTASEQLHEAGYDAYITGLCFISMANYLGSLLGPPKVCVSARSKLIEPFFNKLFLMRV
MDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQ
PEQVQIAVNTSKYAESYRIQTYAQYVGKKREDKQVKRKWTEDSWKEVGRKQPIVPGPCSH
TNSFAATGVIGKRNLSPDPQEAGSENRELEEITDSELEQMDSSADPLPEGRKKAKKLKRL
KKELSLAGTVADSPAMLFEVPDTW
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggagataatccggagcaattttaagattaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttctgtc
actgcattaacaagtggttttgataccccagaagagagatatcagaagcttaaaaagcat
tctatggactttttgctgtttcagtttggcctttgcgcttttaagtatgaccacacagat
tccaagcatataacgaagtcgtttaacttctatgttttccccaagcctttcagtaggtcc
tcgccagatgtcaagtttgtctgtcagagttccagcatcgacttcctagcaagccaagga
tttgactttaataaagtgttttgcagtggaatcccatacctgaatcaagaggaagaaagg
cagctgagagagcagtttgatgaaagacgctcccaggccagtggggcagggactgtggca
aaatgtcctgtgacagttcctgaggaccagaagaagttcattgaccacgtagtaaagaag
atagaggatttcctacaaaatgaagagaagaagatcttggatctggagccatgcactggg
ttccaaagaaaacttatttatcagactttgagttggaagtttccgaaaggcattcatgtt
gaaacgttagaaactgaaaagaaggagagacacatacttatcagcaaagtggatgaggaa
gagcgcaagagaagagagcaggagaagtatgcaaaggagcaggaggaactgaatgatgct
gtgggattttcaagagtcatccatgccattgctaattcgggaaaactggttgttggacac
aatatgctcttggatgtcatgcacacaattcaccagttctactgccctctgcctgcggac
ctgaatgagtttaaggagatgacaacatgtgtcttccccaggctcttggatactaaactg
atggccagcacacagccttttaaggatatcattaacaacacatcccttgcagaactggaa
aagcgcttaaaagagacaccctttgaccctcctaaagttgaaagcgcagaaggctttccg
agctacaacactgcttctgagcagctccatgaggcagggtatgatgcttacatcacagga
ctctgcttcatctccatggcaaattacctaggttctttacttgggcctccaaaagtgtgt
gtgtctgccagatcaaaactcattgaacccttttttaacaagttatttcttatgagggtc
atggacattccctatttaaacttggaagggccagacttgcagcctaaacgtgaccatgtt
ctccacgtgacgttccccaaagagtggaaaacaagtgacctttaccagctcttcagcgcc
tttggtaacattcagatatcctggattgatgacacatcagccttcgtttctctcagccaa
cccgaacaagtacagattgctgttaataccagcaaatatgctgaaagttaccggatccag
acctatgctcagtatgtgggaaagaagcgggaagacaagcaggtcaagaggaagtggacg
gaagacagctggaaggaggtgggcaggaagcagcccattgtgccaggcccctgttcccac
accaacagcttcgcagcaactggcgtgattggaaagagaaatctgagtcctgacccacag
gaagctggctcggagaacagagaattggaggagataactgactctgaacttgaacagatg
gattccagtgcagaccccctcccagagggaaggaaaaaggccaagaagctaaagagattg
aagaaagagctttccttggcaggaactgtcgcagatagccctgccatgctcttcgaagtc
cctgacacgtggtaa
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