Arvicola amphibius (Eurasian water vole): 119812954
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Entry
119812954 CDS
T08327
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
119812954 (Abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
aamp02000
]
119812954 (Abca5)
Transporters [BR:
aamp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
119812954 (Abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
Rad17
Motif
Other DBs
NCBI-GeneID:
119812954
NCBI-ProteinID:
XP_038183926
LinkDB
All DBs
Position
4:11438706..11512008
Genome browser
AA seq
1642 aa
AA seq
DB search
MATAIRDVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYEE
VSDLELSPMDKSSLSNLILGYAPVNNLTSSIMQRVSSDHLPDVIITEEYANEKEMLASSL
SKSSNFVGVVFKDTMSYELRFFPDMIPVSSIYMDSRAGCSKSCDAAQYWSSGFTALQASI
DAAIIQWKTNVSLWKELESTKAVIMGEAAVVEIDAFPRGVVLIYLVIAFSPFGYFLAIHI
VAEKEKKLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIATASSLFPQSSSLVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGVAEFFFTVAFGFVGLLIVLVESFPKSLVWLFS
PFCQCTFLIGIAQVMHLEDFNEGALFSNLTEGPYPLIITIIMLALDSVFYVLLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKTKRNYKELSEGNINGNISLSEIVEPVSSEFIGKEAIRI
SGIQKAYRKKNENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGHRVSEIDEMFEARKMIGICPQLDINFDVLTVEENLSILASIKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKHR
KANRVTVFSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMHIDRYCAT
ESLSSLVRQHIPAAAVLQQNDQQLVYSLPFKDMDKFSGLFSALDIHSNLGIISYGVSMTT
LEDVFLKLEVEAEIDQADYSVFTQQPLEEEIDSKSFDEMEQSLLILSETKASLVSTMSLW
KQQVSTIAKFHVLTLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPDLY
FLKPGDKPHKYKTSLLLQNSTDSDISDLINFFTHQNIMVTMFNDSDYVSAAPHSAALNVV
LAEKDYVFTAVFNSTMVYSLPVMMNIISNYYLYHLNVTEAIQIWSTPFIQEITDIVFKVE
LYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWVGQAVVDFPFFFVV
LTLMLGSLFAFRHGLCFYPVKFLAVALCLIGYAPSVILFTYVASFTFKKILNTKEFWSFI
YSVTALVCIAVTEMTFFLGYSVSAVFHYTFCIAIPIYPLLGCLISFIKGSWKNISKTEET
YNPWDRLLVAVIMPYLHCILWIFLLQHYEKKHGGRSIRKDPFFRTLSQKSKNKKCPEPPI
NADEDEDVKAERLKVKELMSCQCCEEKPAIMVCNLHKEYDDKKDFLHSRKTKKVATKYIS
FSVRKGEILGLLGPNGAGKSTIINILVGDIEPTSGQIFLGDYNSHSNEDDESTKCMGYCP
QTNPLWPDITLQEHFEIYGAVKGMCASDVKEVLSRITNALDLKEHLQKTIKKLPAGIKRK
LCFALSMLGNPQVTLLDEPSTGMDPRAKQHMWRAIRTAFKNRKRAALLTTHYMEEAEAVC
DRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENLEIDRLQREIQYIFPNASRQ
ESFSSILAFKIPKEDVQSLSQSFAKLEEAKHTFAIEEYSFSQATLEQVFVELTKEQEEED
NSCGTLNSTLWWERTQEDRVVF
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcaattagggatgtgggagtttggagacagactagaacacttctgctgaaa
aattacttaattaaatgcaggactaaaaaaagtagcgttcaggaaattctttttcctcta
ttttttttattttggctaatattaattagcatgatgcatccaaataagaaatatgaagaa
gtatctgatttagaacttagccccatggacaagtctagcctttctaaccttattcttgga
tatgctcctgtgaataatcttacaagcagcatcatgcagagagtatcttctgatcatctt
cccgatgttataattactgaagaatatgcaaacgagaaagaaatgctagcatctagtctc
tctaagtcaagtaactttgtaggtgtggttttcaaagacaccatgtcctatgaacttcgt
ttttttcctgatatgattccagtgtcttctatttatatggattcaagagctggctgttca
aaatcgtgtgatgctgctcagtactggtcctcagggttcacagctttacaggcctcaata
gatgctgccattatacagtggaagaccaatgtttccctatggaaggagctggagtcaacc
aaagctgttatcatgggagaagctgccgttgtagaaatagacgcttttccccgaggggtc
gttttaatctatctagtcatagcattctcaccttttgggtactttttggcaattcacatt
gtagcagaaaaagaaaaaaaactaaaggaatttttaaagataatgggacttcatgacact
gctttttggctttcctgggttcttctgtatacaagtttgattttcctcatgtcacttctt
atggcagtcattgctacagcttcttccttattccctcagagtagcagccttgtgattttt
ctgctgttcttcttatatggattatcatctgtgtttttcgctttaatgctgacacctctt
tttaaaaaatctaagcacgtgggagtagctgagttttttttcactgtggcatttggattt
gttggccttttgatagtcctcgtggaaagcttccccaaatctctagtgtggctcttcagt
cctttctgtcagtgtacctttctgatcggtatcgcccaggtcatgcatctagaagatttc
aatgaaggggccttattttctaatctgactgaaggcccctatcctctaatcattactatt
atcatgcttgctcttgacagtgtattctatgtcctcctggctgtgtatcttgatcaagtc
attccaggggaatttggcttaaggagatcatctttatactttctaaaaccatcatattgg
tcaaaaaccaaaagaaattataaggagctatcagagggcaacattaatgggaatattagt
cttagtgaaattgtcgagcctgtttcttcagaattcataggaaaagaagctataagaata
agtggtattcagaaggcctatagaaaaaaaaatgaaaacgtggaagctttgagaaatttg
tcatttgacatatatgaaggtcaaattactgcattactgggtcatagtggaacaggaaaa
agtacattgatgaatattctttgtggattgtgcccgccttctgatgggtttgcttctata
tatggacacagagtctctgaaatagatgaaatgtttgaagcaagaaaaatgattggcatt
tgtccacagttagatataaactttgatgttttgacagtagaagaaaatttatcaattttg
gcttcaatcaaaggaatcccagccaacaatataattcaagaagtgcaaaaggttttactg
gatttggatatgcaagccatcaaagataaccaggcaaaaaaactaagtggtggccaaaaa
agaaagctatctttaggaattgccgttcttgggaatccaaagatactattgctagacgaa
ccaacagcagggatggacccctgctctcgccacattgtctggaatctccttaaacacagg
aaggctaacagggtgacagtgttcagtactcattttatggatgaagctgacattcttgct
gataggaaagctgtcatatcacaaggaatgctgaaatgtgttggttcttcaattttccta
aaaagtaaatggggaatcggctaccgcctgagcatgcacattgacagatactgtgccaca
gagtcgctgtcctcgctggtgaggcagcacattcctgcagccgctgtgctgcagcagaat
gaccagcagctggtgtacagtttgcctttcaaagacatggacaaattttcaggcttgttt
tctgccctagacattcattcaaatctgggcattatttcatatggtgtttctatgacgaca
ttggaagatgtattcttaaagctagaagttgaagcagaaattgaccaagcagattatagt
gtgtttacacagcagccactggaagaagaaatagactcaaaatctttcgatgaaatggaa
cagagtttacttattctttctgaaaccaaagcttctctagtgagcaccatgagcctttgg
aaacagcaagtgtctacaatagcaaagtttcatgtcctcacattgaagcgggaaagcaag
tcagtgcgctcagtgttgcttctgcttttaattttttttgcagttcagatttttatgttt
ttggtacatcattcttttaaaaatgctgtggttcccatcaaacttgttccagacttgtat
ttcctaaaacctggagataaacctcataaatataaaacaagcctgctgcttcagaattct
actgactcagatatcagtgatcttattaactttttcacacaccagaacataatggtgaca
atgtttaatgacagtgactatgtgtctgctgctccccatagtgcagctctaaatgtggtg
cttgcagaaaaggactatgtttttacggctgttttcaacagtactatggtttattcttta
ccagtaatgatgaacatcattagtaactactatctttatcatttaaatgtgactgaagct
atccagatctggagtactccattcattcaagagattactgacatagtctttaaagttgaa
ctatattttcaagcagctttgcttgggattatcgttactgcaatgccaccttactttgcc
atggaaaatgcagagaatcataagatcaaagcttatactcagcttaaactttcaggtctt
ttgccatcagcctattgggttggacaggctgttgtggacttcccctttttctttgttgtt
ctgactttgatgctgggaagtttatttgcatttcgccatggattgtgtttttatcctgta
aaatttctagctgtggctctctgccttatcggctatgcgccatcagttattctcttcacc
tatgttgcttctttcacctttaagaaaattttaaataccaaggaattttggtcatttatc
tattctgtgacagcattggtgtgtattgcagtcactgaaatgaccttctttttgggatac
tcagtgtcagctgtttttcattacaccttttgcatagccattccaatctacccactcctg
ggctgcctgatttctttcataaagggttcttggaagaatatatcaaaaaccgaggaaacc
tacaacccatgggataggcttttagttgctgttataatgccctacctgcactgtattctg
tggattttcctcttacaacactatgagaaaaaacatggaggcagatcaataaggaaggat
ccctttttcaggaccctctcacaaaagtccaaaaataagaagtgtccagaaccaccaatc
aatgcggatgaagatgaagatgtcaaagctgaaagactgaaggttaaagagctgatgagc
tgccagtgttgtgaggagaagccagccattatggtatgcaatttgcataaagaatatgat
gataagaaagattttcttcattcaagaaaaacaaagaaagtggcaacaaaatacatctca
ttctctgtgagaaaaggagagatcttgggactgttgggtcctaatggtgctggcaaaagc
acaattattaatattctggttggggatattgaaccaacttcaggccagatatttctaggt
gattataattcacattcaaatgaagatgacgaatccactaagtgcatgggttactgccct
cagacaaacccgctgtggccagatatcactctgcaggaacactttgaaatctatggagct
gtgaaaggcatgtgtgcgagtgacgtgaaagaagtcctcagtcgaataacaaatgccctt
gatttgaaagaacatcttcagaaaactataaagaaactgcctgcagggatcaagagaaag
ctgtgctttgctctaagtatgctggggaacccacaggttactctattggatgagccatcc
acaggtatggaccccagagccaaacagcacatgtggagagctattcgaactgcatttaaa
aacagaaagcgggctgctcttctgacgactcattacatggaagaggcggaggccgtctgt
gacagagtggcaatcatggtgtctgggcagttaagatgtattggaacagtacaacatcta
aagagtaagtttggcaaaggctactttttggaaattaaattaaaagactggatagaaaac
ctggaaatagaccgccttcaaagagaaattcaatatattttcccaaatgcaagccgccaa
gagagcttttcttctattttggcctttaaaattcctaaagaagatgttcagtccctctca
caatcctttgctaagttggaagaagcaaaacacacctttgccattgaagaatatagcttt
tctcaagccacactggaacaggtttttgttgaacttaccaaagaacaagaagaagaagat
aatagttgtgggactttgaacagcacactttggtgggaaagaacacaggaagatagagta
gtgttttga
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